Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005092A_C01 KMC005092A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19356.1|AF369889_1 embryo-abundant protein EMB [Pisum sati... 110 4e-24
ref|NP_181669.1| putative embryo-abundant protein; protein id: A... 62 4e-09
pir||T09281 embryonic abundant protein EMB34 - white spruce gi|1... 55 4e-07
ref|NP_193984.1| putative protein; protein id: At4g22530.1 [Arab... 52 6e-06
gb|AAM14022.1| unknown protein [Arabidopsis thaliana] 52 6e-06
>gb|AAM19356.1|AF369889_1 embryo-abundant protein EMB [Pisum sativum]
Length = 261
Score = 110 bits (275), Expect(2) = 4e-24
Identities = 53/66 (80%), Positives = 57/66 (86%), Gaps = 1/66 (1%)
Frame = -1
Query: 524 DGADHTGPFEFVTETVMDFDDFLTYIKSWSAYQTAKEKGVELLGEDVVEKFKLAWGED-G 348
DG DHTGPFEFVTET+M FD LTYI+SWSAYQTAKEKGVELL EDVVEKFK+AWGED
Sbjct: 184 DGVDHTGPFEFVTETLMSFDGLLTYIRSWSAYQTAKEKGVELLREDVVEKFKVAWGEDHA 243
Query: 347 QKLAKY 330
K AK+
Sbjct: 244 PKTAKF 249
Score = 22.3 bits (46), Expect(2) = 4e-24
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 328 PIYLRIGKV 302
PIYLRIGKV
Sbjct: 250 PIYLRIGKV 258
>ref|NP_181669.1| putative embryo-abundant protein; protein id: At2g41380.1,
supported by cDNA: gi_18252864 [Arabidopsis thaliana]
gi|25349338|pir||A84841 probable embryo-abundant protein
[imported] - Arabidopsis thaliana
gi|3894186|gb|AAC78535.1| putative embryo-abundant
protein [Arabidopsis thaliana]
gi|18252865|gb|AAL62359.1| putative embryo-abundant
protein [Arabidopsis thaliana]
Length = 269
Score = 62.0 bits (149), Expect = 4e-09
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Frame = -1
Query: 503 PFEFVTETVMDFDDFLTYIKSWSAYQTAKEKGVELLGEDVVEKFKLAWGEDG--QKLAKY 330
P FVTE M F++++TY++S SAYQTAKEKG+ELL ++ +F +W EDG +K+ +Y
Sbjct: 196 PVRFVTEKEMVFEEYMTYLRSSSAYQTAKEKGLELLTAEMEGEFAGSWKEDGKEKKVVRY 255
>pir||T09281 embryonic abundant protein EMB34 - white spruce
gi|1350531|gb|AAB01567.1| embryo-abundant protein [Picea
glauca]
Length = 266
Score = 55.5 bits (132), Expect = 4e-07
Identities = 25/57 (43%), Positives = 34/57 (58%)
Frame = -1
Query: 524 DGADHTGPFEFVTETVMDFDDFLTYIKSWSAYQTAKEKGVELLGEDVVEKFKLAWGE 354
+G T P +F + M + +L Y++SW AYQ AK GV+LL E V +FK AW E
Sbjct: 191 EGESTTAPIKFWPKKEMGLEPYLNYMRSWHAYQKAKATGVDLLDEQTVARFKDAWAE 247
>ref|NP_193984.1| putative protein; protein id: At4g22530.1 [Arabidopsis thaliana]
gi|7486603|pir||T05447 hypothetical protein F7K2.110 -
Arabidopsis thaliana gi|3892708|emb|CAA22158.1| putative
protein [Arabidopsis thaliana]
gi|7269099|emb|CAB79208.1| putative protein [Arabidopsis
thaliana] gi|23297823|gb|AAN13034.1| unknown protein
[Arabidopsis thaliana]
Length = 261
Score = 51.6 bits (122), Expect = 6e-06
Identities = 22/49 (44%), Positives = 33/49 (66%)
Frame = -1
Query: 503 PFEFVTETVMDFDDFLTYIKSWSAYQTAKEKGVELLGEDVVEKFKLAWG 357
P E + + F+ FL ++SWSA AKEKGV+LL ++VV++ + AWG
Sbjct: 193 PMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDLLSDNVVKELETAWG 241
>gb|AAM14022.1| unknown protein [Arabidopsis thaliana]
Length = 237
Score = 51.6 bits (122), Expect = 6e-06
Identities = 22/49 (44%), Positives = 33/49 (66%)
Frame = -1
Query: 503 PFEFVTETVMDFDDFLTYIKSWSAYQTAKEKGVELLGEDVVEKFKLAWG 357
P E + + F+ FL ++SWSA AKEKGV+LL ++VV++ + AWG
Sbjct: 169 PMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDLLSDNVVKELETAWG 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,310,433
Number of Sequences: 1393205
Number of extensions: 8410898
Number of successful extensions: 23642
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23624
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
