Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005086A_C01 KMC005086A_c01
(917 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201447.1| glycosyl hydrolase family 5/cellulase ((1-4)-be... 161 1e-38
pir||T08031 glucose-1-phosphate adenylyltransferase (EC 2.7.7.27... 145 1e-33
pir||JE0132 glucose-1-phosphate adenylyltransferase (EC 2.7.7.27... 141 2e-32
gb|AAK27719.1|AF356003_1 ADP-glucose pyrophosphorylase large sub... 137 3e-31
sp|P55233|GLG1_BETVU Glucose-1-phosphate adenylyltransferase lar... 135 1e-30
>ref|NP_201447.1| glycosyl hydrolase family 5/cellulase ((1-4)-beta-mannan
endohydrolase); protein id: At5g66460.1 [Arabidopsis
thaliana] gi|10177527|dbj|BAB10922.1| mannan
endo-1,4-beta-mannosidase [Arabidopsis thaliana]
gi|23306404|gb|AAN17429.1| mannan
endo-1,4-beta-mannosidase [Arabidopsis thaliana]
Length = 431
Score = 161 bits (408), Expect = 1e-38
Identities = 81/143 (56%), Positives = 102/143 (70%)
Frame = -2
Query: 916 SSYEDQMSFLSGWLNDHIQDAQNILHKPLLFAEFGISTKNLGTNTTPRDRFFNTVYSAVY 737
SS + QM FL+ WL+ HIQDAQN+LHKP++ AEFG S K G RD FNTVYS +Y
Sbjct: 288 SSEQSQMDFLNKWLDAHIQDAQNVLHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIY 347
Query: 736 SSASGGGAAVGGLFWQLLVEGMDSFRDGYEVVLGESPSTAAVIAQQSQ*LNRIRKMYARL 557
SA GGAA GGLFWQLLV G+D+F+DGY ++L +S ST VI+QQS+ L IRK++AR+
Sbjct: 348 GSAKRGGAAAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLTLIRKIFARM 407
Query: 556 RNIEKWNKAKEIRSSQGGK*GPK 488
N+EKW +A+ Q GK G K
Sbjct: 408 INVEKWKRAR--GQGQVGKRGHK 428
>pir||T08031 glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) 2 large chain
- Oriental melon gi|2625088|gb|AAB91464.1| ADP-glucose
pyrophosphorylase large subunit [Cucumis melo]
Length = 518
Score = 145 bits (365), Expect = 1e-33
Identities = 70/78 (89%), Positives = 77/78 (97%)
Frame = +1
Query: 1 TETEIASLVAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIANTDGVQEAERPKEGFYIR 180
TE+EIASL+AEGK+PIG+GENTKIRNCIIDKNAKIGRNVVIANTD VQEA+RP+EGFYIR
Sbjct: 441 TESEIASLLAEGKIPIGIGENTKIRNCIIDKNAKIGRNVVIANTDDVQEADRPEEGFYIR 500
Query: 181 SGITVTLKNATIKDGTVI 234
SGITVTLKNATIKDGT+I
Sbjct: 501 SGITVTLKNATIKDGTII 518
>pir||JE0132 glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) chain wml2 -
Watermelon gi|2642640|gb|AAB91468.1| ADP-glucose
pyrophosphorylase large subunit 2 [Citrullus lanatus]
Length = 481
Score = 141 bits (355), Expect = 2e-32
Identities = 67/78 (85%), Positives = 77/78 (97%)
Frame = +1
Query: 1 TETEIASLVAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIANTDGVQEAERPKEGFYIR 180
TE+EIASL+AEGK+PIG+GENTKIRNCIIDKNA+IGRNVVIAN+D VQEA+RP++GFYIR
Sbjct: 404 TESEIASLLAEGKIPIGIGENTKIRNCIIDKNARIGRNVVIANSDDVQEADRPEDGFYIR 463
Query: 181 SGITVTLKNATIKDGTVI 234
SGITVTLKNATIKDGT+I
Sbjct: 464 SGITVTLKNATIKDGTII 481
>gb|AAK27719.1|AF356003_1 ADP-glucose pyrophosphorylase large subunit CagpL2 [Cicer
arietinum]
Length = 521
Score = 137 bits (344), Expect = 3e-31
Identities = 66/78 (84%), Positives = 73/78 (92%)
Frame = +1
Query: 1 TETEIASLVAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIANTDGVQEAERPKEGFYIR 180
TE+EIASL+AEGKVP+GVGENTKIRNCIIDKNA+IGRNV+I N DGV+EA+R KEGFYIR
Sbjct: 444 TESEIASLLAEGKVPVGVGENTKIRNCIIDKNARIGRNVIITNADGVEEADRTKEGFYIR 503
Query: 181 SGITVTLKNATIKDGTVI 234
SGIT LKNATIKDGTVI
Sbjct: 504 SGITAILKNATIKDGTVI 521
>sp|P55233|GLG1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplast
precursor (ADP-glucose synthase) (ADP-glucose
pyrophosphorylase) (AGPASE S)
(Alpha-D-glucose-1-phosphate adenyl transferase)
gi|1076255|pir||S51944 glucose-1-phosphate
adenylyltransferase (EC 2.7.7.27) large chain S1
precursor - beet gi|556624|emb|CAA55516.1| ADP-glucose
pyrophosphorylase; glucose-1-phosphate
adenylyltransferase [Beta vulgaris]
Length = 522
Score = 135 bits (339), Expect = 1e-30
Identities = 64/78 (82%), Positives = 75/78 (96%)
Frame = +1
Query: 1 TETEIASLVAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIANTDGVQEAERPKEGFYIR 180
TE+EIASL+AEGKVP+GVG+NTKI+NCIIDKNAKIG++VVIANTDGV+EA+RP EGFYIR
Sbjct: 445 TESEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIR 504
Query: 181 SGITVTLKNATIKDGTVI 234
SGIT+ LKNATI+DG VI
Sbjct: 505 SGITIILKNATIQDGLVI 522
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 781,222,380
Number of Sequences: 1393205
Number of extensions: 17295921
Number of successful extensions: 54309
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 51077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54198
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 50473155824
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
