Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005085A_C01 KMC005085A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chlorop... 271 4e-72
pir||S16586 photosystem II oxygen-evolving complex protein 1 - p... 271 4e-72
sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloropla... 271 5e-72
sp|P23322|PSBO_LYCES Oxygen-evolving enhancer protein 1, chlorop... 261 6e-69
dbj|BAA96365.2| oxygen evolving enhancer protein 1 precursor [Br... 259 2e-68
>sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1)
(33 kDa subunit of oxygen evolving system of photosystem
II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane
protein)
Length = 333
Score = 271 bits (694), Expect = 4e-72
Identities = 139/178 (78%), Positives = 156/178 (87%), Gaps = 4/178 (2%)
Frame = +1
Query: 82 AATLMQPTKVAAITSTRSSSTLQLKPTQSISKAFGLESTGAKLTCNLQ----DFANKCAE 249
AATLMQPTKV +++ + LQL+ +QS+SKAFGLE + ++L+C+LQ DFA KC +
Sbjct: 8 AATLMQPTKVGGVSARNN---LQLRSSQSVSKAFGLEPSASRLSCSLQTDLKDFAQKCTD 64
Query: 250 TAKIAGFALATSALVVSGASAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIEGGVDSF 429
AKIAGFALATSALVVSGA+AEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTI+GGVDSF
Sbjct: 65 AAKIAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSF 124
Query: 430 AFKAGKYSAKKICLEPTSFTVKAEGVTKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 603
AFK GKY+AKK CLEPTSFTVKAEGV+KNS DFQ TKLMTRLTYTLDEIEGPFEVSP
Sbjct: 125 AFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSP 182
>pir||S16586 photosystem II oxygen-evolving complex protein 1 - potato
gi|809113|emb|CAA35601.1| 33kDa precursor protein of
oxygen-evolving complex [Solanum tuberosum]
Length = 332
Score = 271 bits (694), Expect = 4e-72
Identities = 139/178 (78%), Positives = 156/178 (87%), Gaps = 4/178 (2%)
Frame = +1
Query: 82 AATLMQPTKVAAITSTRSSSTLQLKPTQSISKAFGLESTGAKLTCNLQ----DFANKCAE 249
AATLMQPTKV +++ + LQL+ +QS+SKAFGLE + ++L+C+LQ DFA KC +
Sbjct: 7 AATLMQPTKVGGVSARNN---LQLRSSQSVSKAFGLEPSASRLSCSLQTDLKDFAQKCTD 63
Query: 250 TAKIAGFALATSALVVSGASAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIEGGVDSF 429
AKIAGFALATSALVVSGA+AEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTI+GGVDSF
Sbjct: 64 AAKIAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSF 123
Query: 430 AFKAGKYSAKKICLEPTSFTVKAEGVTKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 603
AFK GKY+AKK CLEPTSFTVKAEGV+KNS DFQ TKLMTRLTYTLDEIEGPFEVSP
Sbjct: 124 AFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSP 181
>sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1)
(33 kDa subunit of oxygen evolving system of photosystem
II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane
protein) gi|81934|pir||S04132 photosystem II
oxygen-evolving complex protein 1 precursor - garden pea
gi|20621|emb|CAA33408.1| precursor (AA -81 to 248)
[Pisum sativum] gi|344004|dbj|BAA02554.1| precursor for
33-kDa protein of photosystem II [Pisum sativum]
gi|226937|prf||1611461A O2 evolving complex 33kD protein
Length = 329
Score = 271 bits (693), Expect = 5e-72
Identities = 140/177 (79%), Positives = 155/177 (87%), Gaps = 4/177 (2%)
Frame = +1
Query: 82 AATLMQPTKVAAITSTRSSSTLQLKPTQSISKAFGLESTGAKLTCNLQ----DFANKCAE 249
AATLMQPTK+ S+TLQLK QS+SKAFGLE GAK+TC+LQ + A+KC E
Sbjct: 8 AATLMQPTKLR-------SNTLQLKSNQSVSKAFGLEHYGAKVTCSLQSDFKELAHKCVE 60
Query: 250 TAKIAGFALATSALVVSGASAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIEGGVDSF 429
+KIAGFALATSALVVSGASAEG PKRLTFDEIQSKTY+EVKGTGTANQCPTI+GGVDSF
Sbjct: 61 ASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSF 120
Query: 430 AFKAGKYSAKKICLEPTSFTVKAEGVTKNSPLDFQNTKLMTRLTYTLDEIEGPFEVS 600
+FK GKY+AKK+CLEPTSFTVK+EGVTKN+PL FQNTKLMTRLTYTLDEIEGPFEVS
Sbjct: 121 SFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVS 177
>sp|P23322|PSBO_LYCES Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1)
(33 kDa subunit of oxygen evolving system of photosystem
II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane
protein) gi|7489040|pir||T06368 photosystem II
oxygen-evolving complex protein 1 precursor - tomato
gi|19157|emb|CAA78043.1| 33kDa precursor protein of
oxygen-evolving complex [Lycopersicon esculentum]
gi|738944|prf||2001459A O2 evolving protein
complex:SUBUNIT=33kD
Length = 329
Score = 261 bits (666), Expect = 6e-69
Identities = 136/178 (76%), Positives = 148/178 (82%), Gaps = 4/178 (2%)
Frame = +1
Query: 82 AATLMQPTKVAAITSTRSSSTLQLKPTQSISKAFGLESTGAKLTCNLQ----DFANKCAE 249
AATLMQPTKV + LQL+ QS+SKAFG+E +LTC+LQ + A KC +
Sbjct: 8 AATLMQPTKVGV------RNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKCTD 61
Query: 250 TAKIAGFALATSALVVSGASAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIEGGVDSF 429
AKIAGFALATSALVVSGA+AEGVPKRLT+DEIQSKTYMEVKGTGTANQCPTIEGGV SF
Sbjct: 62 AAKIAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIEGGVGSF 121
Query: 430 AFKAGKYSAKKICLEPTSFTVKAEGVTKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 603
AFK GKY+AKK CLEPTSFTVKAEGV+KNS DFQ TKLMTRLTYTLDEIEGPFEVSP
Sbjct: 122 AFKPGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSP 179
>dbj|BAA96365.2| oxygen evolving enhancer protein 1 precursor [Bruguiera
gymnorrhiza]
Length = 332
Score = 259 bits (662), Expect = 2e-68
Identities = 133/178 (74%), Positives = 148/178 (82%), Gaps = 4/178 (2%)
Frame = +1
Query: 82 AATLMQPTKVAAITSTRSSSTLQLKPTQSISKAFGLESTGAKLTCNLQ----DFANKCAE 249
AATLMQP KV + T LQL+ +Q +S+AFGLE A++TC+ Q D A KC +
Sbjct: 8 AATLMQPAKVGVPSRTG----LQLRSSQIVSRAFGLEPAAARITCSSQTDFKDLAQKCVD 63
Query: 250 TAKIAGFALATSALVVSGASAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIEGGVDSF 429
KIAGFALATSALVVSGA AEGVPKRLT+DEIQSKTY+EVKGTGTANQCPTIEGGVDSF
Sbjct: 64 ATKIAGFALATSALVVSGAGAEGVPKRLTYDEIQSKTYLEVKGTGTANQCPTIEGGVDSF 123
Query: 430 AFKAGKYSAKKICLEPTSFTVKAEGVTKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 603
AFK GKY+ KK+CLEPTSFTVKAEGV KN+P +FQNTKLMTRLTYTLDEIEGPFEVSP
Sbjct: 124 AFKPGKYNVKKLCLEPTSFTVKAEGVNKNAPPEFQNTKLMTRLTYTLDEIEGPFEVSP 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.313 0.126 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,391,457
Number of Sequences: 1393205
Number of extensions: 12352079
Number of successful extensions: 28109
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 27294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28045
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
