Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005080A_C01 KMC005080A_c01
(475 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564048.1| peptidylprolyl isomerase, putative; protein id:... 97 9e-20
gb|AAK38500.1|AC087181_16 putative FK506-binding protein [Oryza ... 95 3e-19
gb|AAK50131.1|AC087797_16 putative FK506-binding protein, 5'-par... 95 3e-19
ref|NP_565069.1| peptidylprolyl isomerase, putative; protein id:... 89 2e-17
pir||E96763 unknown protein F25P22.7 [imported] - Arabidopsis th... 89 2e-17
>ref|NP_564048.1| peptidylprolyl isomerase, putative; protein id: At1g18170.1,
supported by cDNA: 42062., supported by cDNA:
gi_12247990 [Arabidopsis thaliana]
gi|8671768|gb|AAF78374.1|AC069551_7 T10O22.14
[Arabidopsis thaliana]
gi|9719731|gb|AAF97833.1|AC034107_16 Contains weak
similarity to immunophilin FKBP46 from Spodoptera
frugiperda gb|U15038 and contains a FKBP-type
peptidyl-prolyl cis-trans isomerase PF|00254 domain.
ESTs gb|T42383, gb|N38271, gb|R90399, gb|AA605386,
gb|AA394960 come from this gene. [Arabidopsis thaliana]
gi|12247991|gb|AAG50087.1|AF334381_1 unknown protein
[Arabidopsis thaliana] gi|21593730|gb|AAM65697.1|
putative FK506-binding protein [Arabidopsis thaliana]
Length = 247
Score = 97.1 bits (240), Expect = 9e-20
Identities = 50/81 (61%), Positives = 63/81 (77%), Gaps = 5/81 (6%)
Frame = -1
Query: 475 GGASPDPGDLVVIDIMGKVESTGEVFVNTFEGDK-----KPLALVMGSRPYSKGVCEGIE 311
GGA+P GDLVVID+ G+V+ TG+VFV+TF G K KPLALV+GS+PYSKG+CEGI+
Sbjct: 134 GGATPRAGDLVVIDLKGQVQGTGQVFVDTF-GTKDKKKMKPLALVVGSKPYSKGLCEGID 192
Query: 310 YVLKTMKAGGKSESNSPSPVG 248
YVL++MKAGGK P +G
Sbjct: 193 YVLRSMKAGGKRRVIVPPSLG 213
Score = 67.0 bits (162), Expect = 1e-10
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -2
Query: 279 KAKVIVPPQLGFRENGADLGSGVQIPPLATLEYIVEVDKVSIAPA 145
K +VIVPP LGF +GA+L SG+QIPP A+LEYIVE+D+VSIAPA
Sbjct: 203 KRRVIVPPSLGFGVDGAELESGLQIPPNASLEYIVEIDRVSIAPA 247
>gb|AAK38500.1|AC087181_16 putative FK506-binding protein [Oryza sativa]
Length = 252
Score = 95.1 bits (235), Expect = 3e-19
Identities = 46/76 (60%), Positives = 58/76 (75%)
Frame = -1
Query: 475 GGASPDPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKT 296
GG P PGDLVVID+ G+V GE FV+TF K+PLALVMGSRPY++G+CEG+EYVL++
Sbjct: 143 GGDVPRPGDLVVIDLKGRVTG-GEAFVDTFGDGKRPLALVMGSRPYTRGMCEGVEYVLRS 201
Query: 295 MKAGGKSESNSPSPVG 248
M+AGGK P +G
Sbjct: 202 MRAGGKRRVVVPPALG 217
Score = 65.1 bits (157), Expect = 4e-10
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -2
Query: 291 RLEAKAKVIVPPQLGFRENGADLG-SGVQIPPLATLEYIVEVDKVSIAPA 145
R K +V+VPP LGF ++GAD G + Q+PP ATLEY+VEVDKVSIAPA
Sbjct: 203 RAGGKRRVVVPPALGFGDDGADFGDAAAQVPPGATLEYVVEVDKVSIAPA 252
>gb|AAK50131.1|AC087797_16 putative FK506-binding protein, 5'-partial [Oryza sativa]
Length = 149
Score = 95.1 bits (235), Expect = 3e-19
Identities = 46/76 (60%), Positives = 58/76 (75%)
Frame = -1
Query: 475 GGASPDPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKT 296
GG P PGDLVVID+ G+V GE FV+TF K+PLALVMGSRPY++G+CEG+EYVL++
Sbjct: 40 GGDVPRPGDLVVIDLKGRVTG-GEAFVDTFGDGKRPLALVMGSRPYTRGMCEGVEYVLRS 98
Query: 295 MKAGGKSESNSPSPVG 248
M+AGGK P +G
Sbjct: 99 MRAGGKRRVVVPPALG 114
Score = 65.1 bits (157), Expect = 4e-10
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -2
Query: 291 RLEAKAKVIVPPQLGFRENGADLG-SGVQIPPLATLEYIVEVDKVSIAPA 145
R K +V+VPP LGF ++GAD G + Q+PP ATLEY+VEVDKVSIAPA
Sbjct: 100 RAGGKRRVVVPPALGFGDDGADFGDAAAQVPPGATLEYVVEVDKVSIAPA 149
>ref|NP_565069.1| peptidylprolyl isomerase, putative; protein id: At1g73655.1,
supported by cDNA: 34970. [Arabidopsis thaliana]
Length = 234
Score = 89.0 bits (219), Expect = 2e-17
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = -1
Query: 472 GASPDPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKTM 293
GA+P G LVV D+ G+V T +VFV+TF G K LA+VM SRPYSKG+C+GIE+VL++M
Sbjct: 124 GATPSSGYLVVFDVKGQVHGTEQVFVDTFGGKGKSLAMVMDSRPYSKGLCQGIEHVLRSM 183
Query: 292 KAGGKSESNSPSPVG 248
KAGGK + P +G
Sbjct: 184 KAGGKRKVIIPPSLG 198
Score = 54.7 bits (130), Expect = 5e-07
Identities = 23/40 (57%), Positives = 30/40 (74%)
Frame = -2
Query: 279 KAKVIVPPQLGFRENGADLGSGVQIPPLATLEYIVEVDKV 160
K KVI+PP LGF + + G G++IPP ATL+YI+EVD V
Sbjct: 188 KRKVIIPPSLGFGDRNVEFGQGLEIPPSATLDYIIEVDTV 227
>pir||E96763 unknown protein F25P22.7 [imported] - Arabidopsis thaliana
gi|12324200|gb|AAG52066.1|AC012679_4 unknown protein;
19725-16797 [Arabidopsis thaliana]
Length = 451
Score = 89.0 bits (219), Expect = 2e-17
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = -1
Query: 472 GASPDPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKTM 293
GA+P G LVV D+ G+V T +VFV+TF G K LA+VM SRPYSKG+C+GIE+VL++M
Sbjct: 124 GATPSSGYLVVFDVKGQVHGTEQVFVDTFGGKGKSLAMVMDSRPYSKGLCQGIEHVLRSM 183
Query: 292 KAGGKSESNSPSPVG 248
KAGGK + P +G
Sbjct: 184 KAGGKRKVIIPPSLG 198
Score = 51.2 bits (121), Expect = 5e-06
Identities = 21/37 (56%), Positives = 28/37 (74%)
Frame = -2
Query: 279 KAKVIVPPQLGFRENGADLGSGVQIPPLATLEYIVEV 169
K KVI+PP LGF + + G G++IPP ATL+YI+EV
Sbjct: 188 KRKVIIPPSLGFGDRNVEFGQGLEIPPSATLDYIIEV 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,221,832
Number of Sequences: 1393205
Number of extensions: 9487683
Number of successful extensions: 22223
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 21559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22194
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
