Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005075A_C01 KMC005075A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00116196.1| hypothetical protein [Synechococcus sp. WH 8102] 40 0.021
ref|NP_712269.1| conserved hypothetical protein [Leptospira inte... 36 0.40
ref|NP_633689.1| conserved protein [Methanosarcina mazei Goe1] g... 35 0.89
ref|NP_701718.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.89
ref|NP_702458.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.0
>ref|ZP_00116196.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 480
Score = 40.0 bits (92), Expect = 0.021
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -2
Query: 80 QATPGFELGKKDLQSPALPLGHAA 9
+A P FELG KDLQS ALPLGHAA
Sbjct: 33 KAAPRFELGIKDLQSSALPLGHAA 56
>ref|NP_712269.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24195793|gb|AAN49287.1|AE011380_7
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 223
Score = 35.8 bits (81), Expect = 0.40
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -2
Query: 80 QATPGFELGKKDLQSPALPLGHAA 9
QA+PGFE G K LQS ALPLGH A
Sbjct: 36 QASPGFEPGIKLLQSHALPLGHDA 59
>ref|NP_633689.1| conserved protein [Methanosarcina mazei Goe1]
gi|20906170|gb|AAM31361.1| conserved protein
[Methanosarcina mazei Goe1]
Length = 190
Score = 34.7 bits (78), Expect = 0.89
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 556 IKKDNIELCEIENLNKKTN*IFNLTNLELILNKYGMNPSYTFYGSLYRRFFLCRLSN 386
+K+D E E++ I NLTN E++L Y P YT + YRR R+ N
Sbjct: 102 LKQDTFSSEEKESIADFKEFISNLTNDEILLFIYASYPEYTIESTEYRRIMKSRVKN 158
>ref|NP_701718.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496890|gb|AAN36442.1|AE014850_7 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 509
Score = 34.7 bits (78), Expect = 0.89
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 577 SNNMFNNIK--KDNIELCEIENLNKKTN*IFNLTNLELILNKY 455
+NN + N+ KDN+ + +NLN + IFN TNL IL KY
Sbjct: 293 NNNQYRNVNNTKDNL-IINYDNLNNEGQCIFNYTNLTNILEKY 334
>ref|NP_702458.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497642|gb|AAN37182.1|AE014825_41 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 801
Score = 33.5 bits (75), Expect = 2.0
Identities = 20/58 (34%), Positives = 32/58 (54%), Gaps = 9/58 (15%)
Frame = -3
Query: 574 NNMFNNIKKDNIE--LCEIENLNKKTN*IFNLTNL-----ELILN--KYGMNPSYTFY 428
NN +NN K N+E LC++EN++ N +FN N+ +++ N K N T+Y
Sbjct: 571 NNQWNNKKDKNMENLLCDLENISINNNELFNSLNVKGNNTQILYNNMKSNQNEDKTYY 628
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,823,731
Number of Sequences: 1393205
Number of extensions: 9532130
Number of successful extensions: 22577
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22562
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
