Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005072A_C01 KMC005072A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199598.1| putative protein; protein id: At5g47870.1, supp... 148 5e-35
gb|AAM65309.1| unknown [Arabidopsis thaliana] 147 9e-35
emb|CAB97356.1| SnRK1-interacting protein 1 [Hordeum vulgare sub... 98 8e-20
dbj|BAB92460.1| putative SnRK1-interacting protein 1 [Oryza sati... 98 8e-20
ref|NP_177287.1| hypothetical protein; protein id: At1g71310.1 [... 96 3e-19
>ref|NP_199598.1| putative protein; protein id: At5g47870.1, supported by cDNA:
38345. [Arabidopsis thaliana]
gi|10177923|dbj|BAB11334.1|
gb|AAF26028.1~gene_id:MCA23.21~similar to unknown
protein [Arabidopsis thaliana]
Length = 199
Score = 148 bits (373), Expect = 5e-35
Identities = 66/83 (79%), Positives = 76/83 (91%)
Frame = -3
Query: 571 RMLSFYAPGWCGEIHDVIFSDNGSVTVVYRLTVRGSDGEAYRESTGTISPNDGSTVDPVS 392
RMLSFYAPGWCGE+ DVIFS+NG+VTVVYRLT+RGSDGEA+RESTGT++ D DPV+
Sbjct: 117 RMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVT 176
Query: 391 AAEEVAFCKACARFGLGLYLYHE 323
AAEE+AFC+ACARFGLGLYLYHE
Sbjct: 177 AAEEIAFCRACARFGLGLYLYHE 199
>gb|AAM65309.1| unknown [Arabidopsis thaliana]
Length = 199
Score = 147 bits (371), Expect = 9e-35
Identities = 66/83 (79%), Positives = 76/83 (91%)
Frame = -3
Query: 571 RMLSFYAPGWCGEIHDVIFSDNGSVTVVYRLTVRGSDGEAYRESTGTISPNDGSTVDPVS 392
RMLSFYAPGWCGE+ DVIFS+NG+VTVVYRLT+RGSDGEA+RESTGT++ D DPV+
Sbjct: 117 RMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDYHIEDPVT 176
Query: 391 AAEEVAFCKACARFGLGLYLYHE 323
AAEE+AFC+ACARFGLGLYLYHE
Sbjct: 177 AAEEIAFCRACARFGLGLYLYHE 199
>emb|CAB97356.1| SnRK1-interacting protein 1 [Hordeum vulgare subsp. vulgare]
Length = 188
Score = 97.8 bits (242), Expect = 8e-20
Identities = 46/85 (54%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = -3
Query: 571 RMLSFYAPGWCGEIHDVIFSDNG-SVTVVYRLTVRGSDGEAYRESTGTISPNDGSTVDPV 395
++L+ +AP W GE+ ++++S +G SV+VVYR+T+ G+D E YRE+TGT S D DPV
Sbjct: 102 KVLNAHAPEWSGEVRNIVYSSDGKSVSVVYRVTLYGTDAEIYREATGTASVEDKGYGDPV 161
Query: 394 SAAEEVAFCKACARFGLGLYLYHED 320
AE +AF +ACAR GLGL+LYHED
Sbjct: 162 QKAEGMAFRRACARLGLGLHLYHED 186
>dbj|BAB92460.1| putative SnRK1-interacting protein 1 [Oryza sativa (japonica
cultivar-group)] gi|22202660|dbj|BAC07318.1| putative
SnRK1-interacting protein 1 [Oryza sativa (japonica
cultivar-group)]
Length = 188
Score = 97.8 bits (242), Expect = 8e-20
Identities = 44/85 (51%), Positives = 63/85 (73%), Gaps = 1/85 (1%)
Frame = -3
Query: 571 RMLSFYAPGWCGEIHDVIFSDNG-SVTVVYRLTVRGSDGEAYRESTGTISPNDGSTVDPV 395
++L+ +AP W GE+ +++S +G SV+V+YR+T+ G+D E YRE+TGT S +D DPV
Sbjct: 102 KILNIHAPEWSGEVRSIVYSSDGKSVSVIYRVTLHGTDAEIYREATGTSSADDTGYGDPV 161
Query: 394 SAAEEVAFCKACARFGLGLYLYHED 320
AE +AF +AC R GLGL+LYHED
Sbjct: 162 QKAEAMAFRRACTRLGLGLHLYHED 186
>ref|NP_177287.1| hypothetical protein; protein id: At1g71310.1 [Arabidopsis
thaliana] gi|25373320|pir||H96737 hypothetical protein
F3I17.4 [imported] - Arabidopsis thaliana
gi|12323832|gb|AAG51886.1|AC016162_7 hypothetical
protein; 63020-64147 [Arabidopsis thaliana]
gi|22135986|gb|AAM91575.1| unknown protein [Arabidopsis
thaliana] gi|23198344|gb|AAN15699.1| unknown protein
[Arabidopsis thaliana]
Length = 176
Score = 95.9 bits (237), Expect = 3e-19
Identities = 46/87 (52%), Positives = 63/87 (71%), Gaps = 1/87 (1%)
Frame = -3
Query: 571 RMLSFYAPGWCGEIHDVIFSDNGS-VTVVYRLTVRGSDGEAYRESTGTISPNDGSTVDPV 395
R+++ +AP W GE+ V +S +G+ VTV YR+T+ G+D E +RESTGT S +D D V
Sbjct: 90 RIMNMHAPEWSGEVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAV 149
Query: 394 SAAEEVAFCKACARFGLGLYLYHEDQM 314
AE +AF +ACARFGLGL+LYHED +
Sbjct: 150 QKAEAMAFRRACARFGLGLHLYHEDAL 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,970,508
Number of Sequences: 1393205
Number of extensions: 10150990
Number of successful extensions: 29244
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 28280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29222
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
