Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005065A_C01 KMC005065A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566996.1| putative protein; protein id: At3g54260.1, supp... 121 5e-27
pir||T47585 hypothetical protein F24B22.220 - Arabidopsis thalia... 120 1e-26
ref|NP_199745.1| putative protein; protein id: At5g49340.1 [Arab... 90 2e-17
dbj|BAB09804.1| emb|CAB82953.1~gene_id:MPH15.5~strong similarity... 88 8e-17
gb|AAM67355.1| unknown [Arabidopsis thaliana] 88 8e-17
>ref|NP_566996.1| putative protein; protein id: At3g54260.1, supported by cDNA:
gi_15451107, supported by cDNA: gi_20148378 [Arabidopsis
thaliana] gi|15451108|gb|AAK96825.1| putative protein
[Arabidopsis thaliana] gi|20148379|gb|AAM10080.1|
putative protein [Arabidopsis thaliana]
Length = 379
Score = 121 bits (304), Expect = 5e-27
Identities = 58/108 (53%), Positives = 77/108 (70%), Gaps = 3/108 (2%)
Frame = -1
Query: 555 SMSPRHNRLNGWKCYNQKHPIQFFSHL---HVPEPLVVLRGVLKRMRFQVYLQDVTTLTA 385
++SPR + G CYNQKHP+ S HVP+ VL VL+ M+++VYL D+TT++A
Sbjct: 268 TVSPRES---GQMCYNQKHPLPSLSSSTKPHVPQQSRVLNKVLRTMKYRVYLYDITTMSA 324
Query: 384 FRRDGHPSVYRKPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSA 241
+RRDGHPSV+++ + E+ G SSDCSHWCLPGVPDIWNEMLS+
Sbjct: 325 YRRDGHPSVFKRAMHEEEKHHRIAGPSSDCSHWCLPGVPDIWNEMLSS 372
>pir||T47585 hypothetical protein F24B22.220 - Arabidopsis thaliana
gi|6822072|emb|CAB71000.1| putative protein [Arabidopsis
thaliana]
Length = 408
Score = 120 bits (300), Expect = 1e-26
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
Frame = -1
Query: 528 NGWKCYNQKHPIQFFSHL---HVPEPLVVLRGVLKRMRFQVYLQDVTTLTAFRRDGHPSV 358
+G CYNQKHP+ S HVP+ VL VL+ M+++VYL D+TT++A+RRDGHPSV
Sbjct: 303 SGQMCYNQKHPLPSLSSSTKPHVPQQSRVLNKVLRTMKYRVYLYDITTMSAYRRDGHPSV 362
Query: 357 YRKPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSA 241
+++ + E+ G SSDCSHWCLPGVPDIWNEMLS+
Sbjct: 363 FKRAMHEEEKHHRIAGPSSDCSHWCLPGVPDIWNEMLSS 401
>ref|NP_199745.1| putative protein; protein id: At5g49340.1 [Arabidopsis thaliana]
Length = 457
Score = 89.7 bits (221), Expect = 2e-17
Identities = 45/110 (40%), Positives = 63/110 (56%), Gaps = 5/110 (4%)
Frame = -1
Query: 549 SPRHNRLNGW----KCYNQKHPIQFFSHLHV-PEPLVVLRGVLKRMRFQVYLQDVTTLTA 385
S H R W +C + PIQ ++ V P + V+ V+ M+ V+ ++T +T
Sbjct: 333 SSSHFRKGAWNSGGQCDGETRPIQNETYTGVYPWMMKVVESVISEMKTPVFYMNITKMTW 392
Query: 384 FRRDGHPSVYRKPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSAWL 235
+R DGHPSVYR+P + P G+ DCSHWCLPGVPD WN++L A L
Sbjct: 393 YRTDGHPSVYRQPAD-PRGTSPAAGMYQDCSHWCLPGVPDSWNQLLYATL 441
>dbj|BAB09804.1| emb|CAB82953.1~gene_id:MPH15.5~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 608
Score = 87.8 bits (216), Expect = 8e-17
Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = -1
Query: 528 NGWKCYNQKHPIQFFSHLH-VPEPLVVLRGVLKRMRFQVYLQDVTTLTAFRRDGHPSVYR 352
+G C ++ PI+ ++L P + VL VL+ M+ V ++T LT +R+DGHPSVYR
Sbjct: 497 SGGACDSETEPIKNDTYLTPYPSKMKVLEKVLRGMKTPVTYLNITRLTDYRKDGHPSVYR 556
Query: 351 KPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSAWL 235
K S+ + +K L DCSHWCLPGVPD WNE+L A L
Sbjct: 557 KQ-SLSEKEKKSPLLYQDCSHWCLPGVPDSWNEILYAEL 594
>gb|AAM67355.1| unknown [Arabidopsis thaliana]
Length = 329
Score = 87.8 bits (216), Expect = 8e-17
Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = -1
Query: 528 NGWKCYNQKHPIQFFSHLH-VPEPLVVLRGVLKRMRFQVYLQDVTTLTAFRRDGHPSVYR 352
+G C ++ PI+ ++L P + VL VL+ M+ V ++T LT +R+DGHPSVYR
Sbjct: 218 SGGACDSETEPIKNDTYLTPYPSKMKVLEKVLRGMKTPVTYLNITRLTDYRKDGHPSVYR 277
Query: 351 KPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSAWL 235
K S+ + +K L DCSHWCLPGVPD WNE+L A L
Sbjct: 278 KQ-SLSEKEKKSPLLYQDCSHWCLPGVPDSWNEILYAEL 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,684,690
Number of Sequences: 1393205
Number of extensions: 9854358
Number of successful extensions: 23143
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 22543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23063
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
