Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005062A_C02 KMC005062A_c02
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61747.1| protein phosphatase-2c, putative [Arabidopsis tha... 170 2e-41
ref|NP_566566.1| protein phosphatase-2c, putative; protein id: A... 170 2e-41
dbj|BAA94987.1| protein phosphatase 2C-like protein [Arabidopsis... 170 2e-41
pir||T51101 protein phosphatase-2c [imported] - common ice plant... 143 2e-33
pir||T51100 protein phosphatase 2C homolog [imported] - common i... 140 1e-32
>gb|AAM61747.1| protein phosphatase-2c, putative [Arabidopsis thaliana]
Length = 384
Score = 170 bits (430), Expect = 2e-41
Identities = 85/109 (77%), Positives = 97/109 (88%), Gaps = 3/109 (2%)
Frame = -1
Query: 624 HSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAGSAKILVKAALHEAARKREMRYSD 445
H L PND FLIFASDGLWEHL+NEKAV+IV+++PRAGSAK L+KAALHEAARKREMRYSD
Sbjct: 276 HPLHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSD 335
Query: 444 LRKIDKKVRRHFHDDISVIVLFLNHDLISRG---TVLNPPLSYRSALDH 307
LRKIDKKVRRHFHDDI+VIV+FLNHDLISRG + + +S RSAL+H
Sbjct: 336 LRKIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 384
>ref|NP_566566.1| protein phosphatase-2c, putative; protein id: At3g17090.1,
supported by cDNA: 13755. [Arabidopsis thaliana]
Length = 384
Score = 170 bits (430), Expect = 2e-41
Identities = 85/109 (77%), Positives = 97/109 (88%), Gaps = 3/109 (2%)
Frame = -1
Query: 624 HSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAGSAKILVKAALHEAARKREMRYSD 445
H L PND FLIFASDGLWEHL+NEKAV+IV+++PRAGSAK L+KAALHEAARKREMRYSD
Sbjct: 276 HPLHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSD 335
Query: 444 LRKIDKKVRRHFHDDISVIVLFLNHDLISRG---TVLNPPLSYRSALDH 307
LRKIDKKVRRHFHDDI+VIV+FLNHDLISRG + + +S RSAL+H
Sbjct: 336 LRKIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 384
>dbj|BAA94987.1| protein phosphatase 2C-like protein [Arabidopsis thaliana]
Length = 379
Score = 170 bits (430), Expect = 2e-41
Identities = 85/109 (77%), Positives = 97/109 (88%), Gaps = 3/109 (2%)
Frame = -1
Query: 624 HSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAGSAKILVKAALHEAARKREMRYSD 445
H L PND FLIFASDGLWEHL+NEKAV+IV+++PRAGSAK L+KAALHEAARKREMRYSD
Sbjct: 271 HPLHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSD 330
Query: 444 LRKIDKKVRRHFHDDISVIVLFLNHDLISRG---TVLNPPLSYRSALDH 307
LRKIDKKVRRHFHDDI+VIV+FLNHDLISRG + + +S RSAL+H
Sbjct: 331 LRKIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 379
>pir||T51101 protein phosphatase-2c [imported] - common ice plant (fragment)
gi|3608412|gb|AAC35951.1| protein phosphatase-2c
[Mesembryanthemum crystallinum]
Length = 309
Score = 143 bits (361), Expect = 2e-33
Identities = 69/92 (75%), Positives = 81/92 (88%)
Frame = -1
Query: 624 HSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAGSAKILVKAALHEAARKREMRYSD 445
H LQP+D F+IFASDGLWEHLSN+KAVDIV +NP GSAK LVK AL EAA+KREMRYSD
Sbjct: 193 HELQPHDQFVIFASDGLWEHLSNQKAVDIVQNNPHNGSAKRLVKIALQEAAKKREMRYSD 252
Query: 444 LRKIDKKVRRHFHDDISVIVLFLNHDLISRGT 349
L+KID+ VRRHFHDDI+VIV+FL+ +L+SR T
Sbjct: 253 LKKIDRGVRRHFHDDITVIVVFLDSNLVSRAT 284
>pir||T51100 protein phosphatase 2C homolog [imported] - common ice plant
gi|4206122|gb|AAD11430.1| protein phosphatase 2C homolog
[Mesembryanthemum crystallinum]
Length = 396
Score = 140 bits (354), Expect = 1e-32
Identities = 71/107 (66%), Positives = 86/107 (80%), Gaps = 1/107 (0%)
Frame = -1
Query: 624 HSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAGSAKILVKAALHEAARKREMRYSD 445
H LQP+D IFASDGLWEHL+N++AVD+V +PR GSAK LVK AL EAA+KREMRYSD
Sbjct: 272 HELQPHDQVCIFASDGLWEHLTNQEAVDLVQKSPRNGSAKRLVKVALQEAAKKREMRYSD 331
Query: 444 LRKIDKKVRRHFHDDISVIVLFLNHDLISRG-TVLNPPLSYRSALDH 307
L+KID+ VRRHFHDDI+V+V+FL+ +LISRG +V P LS R H
Sbjct: 332 LKKIDRGVRRHFHDDITVVVVFLDSNLISRGSSVRGPTLSLRGGGIH 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,986,572
Number of Sequences: 1393205
Number of extensions: 11345069
Number of successful extensions: 29124
Number of sequences better than 10.0: 224
Number of HSP's better than 10.0 without gapping: 28454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29104
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
