Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005060A_C02 KMC005060A_c02
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565868.1| expressed protein; protein id: At2g37660.1, sup... 183 2e-45
pir||T02532 hypothetical protein At2g37660 [imported] - Arabidop... 183 2e-45
gb|AAK73149.1|AC079022_22 putative 3-beta hydroxysteroid dehydro... 179 4e-44
gb|AAO18441.1| unknown protein [Oryza sativa (japonica cultivar-... 173 2e-42
ref|NP_568098.1| putative protein; protein id: At5g02240.1, supp... 171 1e-41
>ref|NP_565868.1| expressed protein; protein id: At2g37660.1, supported by cDNA:
13797., supported by cDNA: gi_14596078, supported by
cDNA: gi_20148254 [Arabidopsis thaliana]
gi|22096383|sp|O80934|Y230_ARATH Protein At2g37660,
chloroplast precursor gi|14596079|gb|AAK68767.1| Unknown
protein [Arabidopsis thaliana]
gi|20148255|gb|AAM10018.1| unknown protein [Arabidopsis
thaliana] gi|20197253|gb|AAC23636.2| expressed protein
[Arabidopsis thaliana] gi|21537410|gb|AAM61751.1|
putative 3-beta hydroxysteroid dehydrogenase/isomerase
protein [Arabidopsis thaliana]
Length = 325
Score = 183 bits (465), Expect = 2e-45
Identities = 90/126 (71%), Positives = 106/126 (83%)
Frame = -2
Query: 687 VLVGSMGGTDLNNPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELI 508
VLVGSMGGT++N+PLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GG+REL+
Sbjct: 201 VLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELL 260
Query: 507 IGKDDEILKTETRTIARPDVAEVCIQALNFEGGPI*GI*PWHQNLRVQGTPTRDFKALFS 328
+GKDDE+L+TETRTIAR DVAEVC+QAL E + GTPT+DFKALF+
Sbjct: 261 VGKDDELLETETRTIARADVAEVCVQALQLEEAKFKAL-DLASKPEGTGTPTKDFKALFT 319
Query: 327 QITTRF 310
Q+TT+F
Sbjct: 320 QVTTKF 325
>pir||T02532 hypothetical protein At2g37660 [imported] - Arabidopsis thaliana
Length = 337
Score = 183 bits (465), Expect = 2e-45
Identities = 90/126 (71%), Positives = 106/126 (83%)
Frame = -2
Query: 687 VLVGSMGGTDLNNPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELI 508
VLVGSMGGT++N+PLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GG+REL+
Sbjct: 213 VLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELL 272
Query: 507 IGKDDEILKTETRTIARPDVAEVCIQALNFEGGPI*GI*PWHQNLRVQGTPTRDFKALFS 328
+GKDDE+L+TETRTIAR DVAEVC+QAL E + GTPT+DFKALF+
Sbjct: 273 VGKDDELLETETRTIARADVAEVCVQALQLEEAKFKAL-DLASKPEGTGTPTKDFKALFT 331
Query: 327 QITTRF 310
Q+TT+F
Sbjct: 332 QVTTKF 337
>gb|AAK73149.1|AC079022_22 putative 3-beta hydroxysteroid dehydrogenase/isomerase protein
[Oryza sativa]
Length = 293
Score = 179 bits (453), Expect = 4e-44
Identities = 90/126 (71%), Positives = 102/126 (80%)
Frame = -2
Query: 687 VLVGSMGGTDLNNPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELI 508
VLVGSMGGTD+N+PLN LGN NILVWKRKAEQYLADSG+PYTIIRAGGLQDK+GGVREL+
Sbjct: 169 VLVGSMGGTDVNHPLNKLGNANILVWKRKAEQYLADSGLPYTIIRAGGLQDKDGGVRELL 228
Query: 507 IGKDDEILKTETRTIARPDVAEVCIQALNFEGGPI*GI*PWHQNLRVQGTPTRDFKALFS 328
+GKDDEILKTET+TI R DVAEVC+QAL FE +G PT DF+ALFS
Sbjct: 229 VGKDDEILKTETKTITRADVAEVCLQALLFEEARFKAF-DLASKPEGEGVPTTDFRALFS 287
Query: 327 QITTRF 310
Q+ +RF
Sbjct: 288 QVNSRF 293
>gb|AAO18441.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 257
Score = 173 bits (439), Expect = 2e-42
Identities = 86/126 (68%), Positives = 102/126 (80%)
Frame = -2
Query: 687 VLVGSMGGTDLNNPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELI 508
VLVGSMGGT+ N+PLNSLGNGNILVWKRK+EQYLADSG+PYTIIR GGLQDK+GGVRELI
Sbjct: 133 VLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGGLQDKDGGVRELI 192
Query: 507 IGKDDEILKTETRTIARPDVAEVCIQALNFEGGPI*GI*PWHQNLRVQGTPTRDFKALFS 328
+G DDE+L+T+T++I R DVAEVC+QAL +E GTPT+DFK+LFS
Sbjct: 193 VGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAF-DLASKPEGTGTPTKDFKSLFS 251
Query: 327 QITTRF 310
Q+T RF
Sbjct: 252 QVTARF 257
>ref|NP_568098.1| putative protein; protein id: At5g02240.1, supported by cDNA:
gi_15294289 [Arabidopsis thaliana]
gi|15294290|gb|AAK95322.1|AF410336_1 AT5g02240/T7H20_290
[Arabidopsis thaliana] gi|22655434|gb|AAM98309.1|
At5g02240/T7H20_290 [Arabidopsis thaliana]
gi|23397218|gb|AAN31891.1| unknown protein [Arabidopsis
thaliana]
Length = 253
Score = 171 bits (432), Expect = 1e-41
Identities = 88/128 (68%), Positives = 105/128 (81%), Gaps = 2/128 (1%)
Frame = -2
Query: 687 VLVGSMGGTDLNNPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELI 508
V+VGSMGGT+ ++PLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGGVREL+
Sbjct: 129 VVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELL 188
Query: 507 IGKDDEILKTETRTIARPDVAEVCIQALNFEGGPI*GI*PWHQNLRVQG--TPTRDFKAL 334
+GKDDE+L+T+T+T+ R DVAEVCIQAL FE + + +G TPT+DFKAL
Sbjct: 189 VGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKA---FDLGSKPEGTSTPTKDFKAL 245
Query: 333 FSQITTRF 310
FSQ+T+RF
Sbjct: 246 FSQVTSRF 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,581,213
Number of Sequences: 1393205
Number of extensions: 12665709
Number of successful extensions: 27643
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 26966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27615
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
