Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005057A_C01 KMC005057A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172325.2| nitrogen fixation protein (nifS), putative; pro... 216 2e-55
gb|AAF22900.1|AC006932_17 T27G7.17 [Arabidopsis thaliana] 189 2e-47
ref|ZP_00072086.1| hypothetical protein [Trichodesmium erythraeu... 153 1e-36
gb|ZP_00111442.1| hypothetical protein [Nostoc punctiforme] 149 2e-35
ref|NP_486535.1| probable aminotransferase [Nostoc sp. PCC 7120]... 145 5e-34
>ref|NP_172325.2| nitrogen fixation protein (nifS), putative; protein id:
At1g08490.1, supported by cDNA: gi_16152175, supported
by cDNA: gi_20453111 [Arabidopsis thaliana]
gi|16152176|gb|AAL14994.1|AF419347_1 NIFS-like protein
CpNifsp precursor [Arabidopsis thaliana]
gi|20453112|gb|AAM19798.1| At1g08490/T27G7_14
[Arabidopsis thaliana] gi|23506185|gb|AAN31104.1|
At1g08490/T27G7_14 [Arabidopsis thaliana]
gi|27085243|gb|AAL79956.1| cysteine desulfurase
[Arabidopsis thaliana]
Length = 463
Score = 216 bits (550), Expect = 2e-55
Identities = 102/123 (82%), Positives = 110/123 (88%)
Frame = -2
Query: 602 YLSGIGMQTIHDYEVELGTYLYERLLSVPNIHIYGPEPSEKVERAALCSFNVENLHPTDL 423
YLSGIGM IH+YEVE+G YLYE+L S+P++ IYGP PSE V R ALCSFNVE LHPTDL
Sbjct: 341 YLSGIGMPKIHEYEVEIGKYLYEKLSSLPDVRIYGPRPSESVHRGALCSFNVEGLHPTDL 400
Query: 422 ATFLDQQHGVAIRSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQALHDTVSFFN 243
ATFLDQQHGVAIRSGHHCAQPLHRY+GVNASARASLYFYNTK+DVD FI AL DTVSFFN
Sbjct: 401 ATFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKDDVDAFIVALADTVSFFN 460
Query: 242 SFK 234
SFK
Sbjct: 461 SFK 463
>gb|AAF22900.1|AC006932_17 T27G7.17 [Arabidopsis thaliana]
Length = 526
Score = 189 bits (480), Expect = 2e-47
Identities = 102/171 (59%), Positives = 110/171 (63%), Gaps = 48/171 (28%)
Frame = -2
Query: 602 YLSGIGMQTIHDYE--------VELGTYLYERLLSVPNIHIYGPEPSEKVERAALCSFNV 447
YLSGIGM IH+YE VE+G YLYE+L S+P++ IYGP PSE V R ALCSFNV
Sbjct: 356 YLSGIGMPKIHEYEILISCVIQVEIGKYLYEKLSSLPDVRIYGPRPSESVHRGALCSFNV 415
Query: 446 ENLHPTDLATFLDQQ----------------------------------------HGVAI 387
E LHPTDLATFLDQQ HGVAI
Sbjct: 416 EGLHPTDLATFLDQQIKQIHLDRSNVNRPPQTPTLLSHQNIHSGMKTENEYCMLQHGVAI 475
Query: 386 RSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQALHDTVSFFNSFK 234
RSGHHCAQPLHRY+GVNASARASLYFYNTK+DVD FI AL DTVSFFNSFK
Sbjct: 476 RSGHHCAQPLHRYLGVNASARASLYFYNTKDDVDAFIVALADTVSFFNSFK 526
>ref|ZP_00072086.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 420
Score = 153 bits (387), Expect = 1e-36
Identities = 72/120 (60%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Frame = -2
Query: 602 YLSGIGMQTIHDYEVELGTYLYERLLSVPNIHIYGPEPSEKVE-RAALCSFNVENLHPTD 426
YL+ IGM+ IH+YEVEL TYL+ +L +P I IYGP+P+ E R L SF VEN+HP D
Sbjct: 297 YLTNIGMEKIHNYEVELTTYLFNKLRQIPQITIYGPQPNTYGEGRGTLVSFTVENIHPND 356
Query: 425 LATFLDQQHGVAIRSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQALHDTVSFF 246
L+T LD+ G+AIRSGHHCAQPLH+Y+ V+++ARASL FYNT++D+D F+ AL DT++FF
Sbjct: 357 LSTMLDEA-GIAIRSGHHCAQPLHQYLKVSSTARASLSFYNTRDDIDIFVDALKDTINFF 415
>gb|ZP_00111442.1| hypothetical protein [Nostoc punctiforme]
Length = 420
Score = 149 bits (377), Expect = 2e-35
Identities = 74/123 (60%), Positives = 92/123 (74%), Gaps = 1/123 (0%)
Frame = -2
Query: 602 YLSGIGMQTIHDYEVELGTYLYERLLSVPNIHIYGPEPSEKVE-RAALCSFNVENLHPTD 426
YLS IGM IH YE EL YL+++L +P I IYGP+P+ K E RAAL SF +H D
Sbjct: 297 YLSSIGMDKIHAYEAELTAYLFQQLEQIPQIRIYGPKPNAKGEGRAALASFTAGEVHAND 356
Query: 425 LATFLDQQHGVAIRSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQALHDTVSFF 246
L+T LDQ+ GVAIRSGHHC QPLHRY+G+ A+ARASL FYNT+E++D FI+AL +T+ FF
Sbjct: 357 LSTLLDQE-GVAIRSGHHCTQPLHRYLGLAATARASLSFYNTREEIDIFIKALKETLDFF 415
Query: 245 NSF 237
F
Sbjct: 416 AGF 418
>ref|NP_486535.1| probable aminotransferase [Nostoc sp. PCC 7120]
gi|25317585|pir||AH2117 hypothetical protein alr2495
[imported] - Nostoc sp. (strain PCC 7120)
gi|17131587|dbj|BAB74194.1| ORF_ID:alr2495~probable
aminotransferase [Nostoc sp. PCC 7120]
Length = 420
Score = 145 bits (365), Expect = 5e-34
Identities = 70/120 (58%), Positives = 90/120 (74%), Gaps = 1/120 (0%)
Frame = -2
Query: 602 YLSGIGMQTIHDYEVELGTYLYERLLSVPNIHIYGPEPSEKVE-RAALCSFNVENLHPTD 426
YL+ IGM+ IH YE EL YLY++L +P I +YGP+P E RAAL +F +H D
Sbjct: 297 YLTNIGMEQIHAYEAELTAYLYQQLEQIPQITLYGPKPDANGEGRAALATFTTTGVHAND 356
Query: 425 LATFLDQQHGVAIRSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQALHDTVSFF 246
L+T LDQ+ GVAIRSGHHC QPLHR++G+ A+ARASL FYNT+ED+D FI+AL +T+ FF
Sbjct: 357 LSTLLDQE-GVAIRSGHHCTQPLHRHLGLAATARASLSFYNTREDIDVFIKALKETIDFF 415
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,057,370
Number of Sequences: 1393205
Number of extensions: 10835261
Number of successful extensions: 25048
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 24074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24897
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
