Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005056A_C01 KMC005056A_c01
(1257 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084792.1| photosystem II 44 kDa protein [Lotus japonicus]... 246 5e-64
sp|P06004|PSBC_PEA Photosystem II 44 kDa reaction center protein... 246 5e-64
ref|NP_054929.1| photosystem II 44 kDa protein [Spinacia olerace... 245 1e-63
ref|NP_051055.1| photosystem II 44 kDa protein [Arabidopsis thal... 245 1e-63
ref|NP_054492.2| photosystem II 44 kDa protein [Nicotiana tabacu... 244 2e-63
>ref|NP_084792.1| photosystem II 44 kDa protein [Lotus japonicus]
gi|23821996|sp|Q9BBT1|PSBC_LOTJA Photosystem II 44 kDa
reaction center protein (P6 protein) (CP43)
gi|13358973|dbj|BAB33190.1| PSII 43 KDa protein [Lotus
japonicus]
Length = 473
Score = 246 bits (628), Expect = 5e-64
Identities = 117/120 (97%), Positives = 117/120 (97%)
Frame = -1
Query: 1245 ENYAFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 1066
E FWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE
Sbjct: 354 ETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 413
Query: 1065 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 886
INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Sbjct: 414 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 473
>sp|P06004|PSBC_PEA Photosystem II 44 kDa reaction center protein (P6 protein) (CP43)
gi|473494|gb|AAB59336.1| 44 kd photosystem II protein
[Pisum sativum]
Length = 473
Score = 246 bits (628), Expect = 5e-64
Identities = 117/120 (97%), Positives = 117/120 (97%)
Frame = -1
Query: 1245 ENYAFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 1066
E FWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE
Sbjct: 354 ETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 413
Query: 1065 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 886
INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Sbjct: 414 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 473
>ref|NP_054929.1| photosystem II 44 kDa protein [Spinacia oleracea]
gi|131286|sp|P06003|PSBC_SPIOL Photosystem II 44 kDa
reaction center protein precursor (P6 protein) (CP43)
gi|2144937|pir||F2SP44 photosystem II chlorophyll
a-binding protein psbC precursor - spinach chloroplast
gi|343362|gb|AAA84631.1| 44 kD chlorophyll a apoprotein
gi|7636102|emb|CAB88722.1| PSII 44kd protein [Spinacia
oleracea]
Length = 473
Score = 245 bits (625), Expect = 1e-63
Identities = 116/120 (96%), Positives = 117/120 (96%)
Frame = -1
Query: 1245 ENYAFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 1066
E FWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE
Sbjct: 354 ETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 413
Query: 1065 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 886
INAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Sbjct: 414 INAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 473
>ref|NP_051055.1| photosystem II 44 kDa protein [Arabidopsis thaliana]
gi|6685793|sp|P56778|PSBC_ARATH Photosystem II 44 kDa
reaction center protein (P6 protein) (CP43)
gi|5881690|dbj|BAA84381.1| PSII 43 KDa protein
[Arabidopsis thaliana]
Length = 473
Score = 245 bits (625), Expect = 1e-63
Identities = 116/120 (96%), Positives = 117/120 (96%)
Frame = -1
Query: 1245 ENYAFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 1066
E FWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE
Sbjct: 354 ETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 413
Query: 1065 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 886
INAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Sbjct: 414 INAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 473
>ref|NP_054492.2| photosystem II 44 kDa protein [Nicotiana tabacum]
gi|13624634|emb|CAA77414.2| PSII 44kd protein [Nicotiana
tabacum]
Length = 461
Score = 244 bits (624), Expect = 2e-63
Identities = 116/120 (96%), Positives = 116/120 (96%)
Frame = -1
Query: 1245 ENYAFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 1066
E FWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE
Sbjct: 342 ETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATE 401
Query: 1065 INAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 886
INAVNYVSPRSWLATSHFVLGFF FVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Sbjct: 402 INAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,100,063,264
Number of Sequences: 1393205
Number of extensions: 25247358
Number of successful extensions: 70729
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 65517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70521
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 79758461764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
