Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005054A_C01 KMC005054A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00114758.1| hypothetical protein [Synechococcus sp. WH 8102] 47 3e-04
ref|ZP_00070956.1| hypothetical protein [Trichodesmium erythraeu... 45 6e-04
ref|NP_681253.1| chorismate synthase [Thermosynechococcus elonga... 45 7e-04
ref|NP_564534.1| chorismate synthase, putative; protein id: At1g... 44 0.001
ref|NP_484840.1| chorismate synthase [Nostoc sp. PCC 7120] gi|23... 44 0.001
>ref|ZP_00114758.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 390
Score = 46.6 bits (109), Expect = 3e-04
Identities = 22/36 (61%), Positives = 27/36 (74%)
Frame = -3
Query: 581 PGFGSPVFDQLEAELAKAVMSHLQLRAFHLVSGFAG 474
PG G PVFD+LEA+LAKAVMS + F + SGF+G
Sbjct: 247 PGLGMPVFDKLEADLAKAVMSLPATKGFEIGSGFSG 282
>ref|ZP_00070956.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 370
Score = 45.4 bits (106), Expect = 6e-04
Identities = 22/35 (62%), Positives = 26/35 (73%)
Frame = -3
Query: 578 GFGSPVFDQLEAELAKAVMSHLQLRAFHLVSGFAG 474
G GSPVFD+LEA+LAK VMS + F + SGFAG
Sbjct: 220 GLGSPVFDKLEADLAKGVMSLPATKGFEIGSGFAG 254
>ref|NP_681253.1| chorismate synthase [Thermosynechococcus elongatus BP-1]
gi|22294184|dbj|BAC08015.1| chorismate synthase
[Thermosynechococcus elongatus BP-1]
Length = 363
Score = 45.1 bits (105), Expect = 7e-04
Identities = 22/35 (62%), Positives = 26/35 (73%)
Frame = -3
Query: 578 GFGSPVFDQLEAELAKAVMSHLQLRAFHLVSGFAG 474
G GSPVFD+LEA+LAK VMS + F + SGFAG
Sbjct: 220 GLGSPVFDKLEADLAKGVMSLPASKGFEIGSGFAG 254
>ref|NP_564534.1| chorismate synthase, putative; protein id: At1g48850.1, supported
by cDNA: gi_15982823 [Arabidopsis thaliana]
gi|15982824|gb|AAL09759.1| At1g48850/T24P22_3
[Arabidopsis thaliana]
Length = 436
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/35 (62%), Positives = 25/35 (70%)
Frame = -3
Query: 578 GFGSPVFDQLEAELAKAVMSHLQLRAFHLVSGFAG 474
G G+PVFD+LEAELAKA MS + F SGFAG
Sbjct: 273 GLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAG 307
>ref|NP_484840.1| chorismate synthase [Nostoc sp. PCC 7120]
gi|23813718|sp|Q8YYP9|AROC_ANASP Chorismate synthase
(5-enolpyruvylshikimate-3-phosphate phospholyase)
gi|25292293|pir||AC1906 chorismate synthase [imported] -
Nostoc sp. (strain PCC 7120) gi|17130142|dbj|BAB72754.1|
chorismate synthase [Nostoc sp. PCC 7120]
Length = 362
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 578 GFGSPVFDQLEAELAKAVMSHLQLRAFHLVSGFAG 474
G G PVFD+LEA++AKAVMS + F + SGFAG
Sbjct: 220 GLGEPVFDKLEADIAKAVMSLPASKGFEIGSGFAG 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,725,071
Number of Sequences: 1393205
Number of extensions: 9776414
Number of successful extensions: 25244
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 23877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25042
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
