Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005048A_C01 KMC005048A_c01
(1100 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [V... 424 e-143
pir||T02877 probable chlorophyll a/b-binding protein - rice gi|3... 412 e-132
prf||1908421A light-harvesting complex IIa protein; 412 e-132
ref|NP_195773.1| light-harvesting chlorophyll a/b binding protei... 420 e-132
gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis... 420 e-131
>gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 424 bits (1089), Expect(2) = e-143
Identities = 206/222 (92%), Positives = 214/222 (95%)
Frame = -3
Query: 858 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYS 679
DGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKN AG +IGTRTE DVKSTPFQPYS
Sbjct: 68 DGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYS 127
Query: 678 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGLPLPFSI 499
EVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELVEGSSYLG PLPFSI
Sbjct: 128 EVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 187
Query: 498 TALIWIEVLVIGYLEFPRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARL 319
T LIWIEVLVIGY+EF RNAELDPEKRLYPGGS+FDPLGLA+DPEKKATLQLAEIKHARL
Sbjct: 188 TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARL 247
Query: 318 AMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTIIDTFSSS 193
AMV FLGFAVQAAATGKGPL+NWATHLSDPLHTTIIDTFSSS
Sbjct: 248 AMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
Score = 108 bits (271), Expect(2) = e-143
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = -2
Query: 1066 MATATATAAATSSFIGTRLRDAQPSLGRVQARFGFGIGKKKAAPKKVARPGPGTERPLWY 887
MATATATAAATSSF+GTRL DA GR+QARFGFG KKKAAPKKV++ GP T+RPLWY
Sbjct: 1 MATATATAAATSSFMGTRLLDAHSGSGRIQARFGFG-SKKKAAPKKVSK-GPSTDRPLWY 58
Query: 886 PGAKAPEWL 860
PGAKAPEWL
Sbjct: 59 PGAKAPEWL 67
>pir||T02877 probable chlorophyll a/b-binding protein - rice
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding
protein [Oryza sativa]
Length = 290
Score = 412 bits (1060), Expect(2) = e-132
Identities = 199/222 (89%), Positives = 212/222 (94%)
Frame = -3
Query: 858 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYS 679
DGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKN AG++IGTR E +VKSTPFQPY+
Sbjct: 68 DGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPFQPYT 127
Query: 678 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGLPLPFSI 499
EVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLG PLPFSI
Sbjct: 128 EVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSI 187
Query: 498 TALIWIEVLVIGYLEFPRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARL 319
+ LIWIEVLVIGY+EF RNAELDPEKRLYPGGS+FDPLGLA+DPEKK LQLAEIKHARL
Sbjct: 188 STLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARL 247
Query: 318 AMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTIIDTFSSS 193
AMVAFLGFAVQAAATGKGPL+NWATHLSDPLHTTI DTFSSS
Sbjct: 248 AMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFSSS 289
Score = 82.8 bits (203), Expect(2) = e-132
Identities = 42/67 (62%), Positives = 51/67 (75%), Gaps = 1/67 (1%)
Frame = -2
Query: 1057 ATATAAATSSFIGTRLRDAQPSLGRVQARFGFGIGKKKAAPKKVARPG-PGTERPLWYPG 881
A++ AAA S+F+GTRL D P GR+ ARFGFG G KKAA KK ARP P T+RPLW+PG
Sbjct: 2 ASSVAAAASTFLGTRLADPAPQSGRIVARFGFG-GGKKAAAKKAARPSAPTTDRPLWFPG 60
Query: 880 AKAPEWL 860
A AP++L
Sbjct: 61 AVAPDYL 67
>prf||1908421A light-harvesting complex IIa protein;
Length = 286
Score = 412 bits (1060), Expect(2) = e-132
Identities = 198/222 (89%), Positives = 212/222 (95%)
Frame = -3
Query: 858 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYS 679
DG+LVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLA+NLAG++IGTR E DVKSTPFQPY+
Sbjct: 65 DGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQPYA 124
Query: 678 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGLPLPFSI 499
EVFGLQRFRECELIHGRWAMLATLGALTVEWLTG+TWQDAGKVELV+GSSYLG PLPF+I
Sbjct: 125 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTI 184
Query: 498 TALIWIEVLVIGYLEFPRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARL 319
T LIWIEVLVIGY+EF RNAELDPE+RLYPGGS+FDPLGLAADPEKK TLQLAEIKHARL
Sbjct: 185 TTLIWIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARL 244
Query: 318 AMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTIIDTFSSS 193
AMVAFLGFAVQAAATGKG L+NWATHLSDPLHTTI DTF SS
Sbjct: 245 AMVAFLGFAVQAAATGKGRLNNWATHLSDPLHTTIFDTFGSS 286
Score = 82.4 bits (202), Expect(2) = e-132
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = -2
Query: 1057 ATATAAATSSFIGTRLRDAQPSLGRVQARFGFGIGKKKAAPKKVARPGPGTERPLWYPGA 878
A++ AAA S+F+GTRL D +P GR+ ARFGFG KKKA PKK P P T+RPLW+PGA
Sbjct: 2 ASSVAAAASTFLGTRLADPRPQNGRIVARFGFG--KKKAPPKKAKAP-PTTDRPLWFPGA 58
Query: 877 KAPEWL 860
+APE+L
Sbjct: 59 QAPEYL 64
>ref|NP_195773.1| light-harvesting chlorophyll a/b binding protein; protein id:
At5g01530.1, supported by cDNA: gi_13877546, supported
by cDNA: gi_15081738, supported by cDNA: gi_15081814,
supported by cDNA: gi_16323074, supported by cDNA:
gi_16648982, supported by cDNA: gi_20148702, supported
by cDNA: gi_20260161 [Arabidopsis thaliana]
gi|421826|pir||S33443 chlorophyll a/b-binding protein
CP29 - Arabidopsis thaliana gi|298036|emb|CAA50712.1|
CP29 [Arabidopsis thaliana] gi|7327812|emb|CAB82269.1|
chlorophyll a/b-binding protein CP29 [Arabidopsis
thaliana] gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50
[Arabidopsis thaliana] gi|16323075|gb|AAL15272.1|
AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding
protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding
protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50
[Arabidopsis thaliana]
Length = 290
Score = 420 bits (1080), Expect(2) = e-132
Identities = 204/222 (91%), Positives = 212/222 (94%)
Frame = -3
Query: 858 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYS 679
DGSLVGDYGFDPFGLGKPAEYLQFD+DSLDQNLAKNLAGDVIGTRTE D KSTPFQPYS
Sbjct: 69 DGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYS 128
Query: 678 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGLPLPFSI 499
EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLG PLPFSI
Sbjct: 129 EVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSI 188
Query: 498 TALIWIEVLVIGYLEFPRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARL 319
+ LIWIEVLVIGY+EF RNAELD EKRLYPGG FFDPLGLAADPEK A LQLAEIKHARL
Sbjct: 189 STLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARL 248
Query: 318 AMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTIIDTFSSS 193
AMVAFLGFAVQAAATGKGPL+NWATHLSDPLHTTIIDTFSSS
Sbjct: 249 AMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
Score = 74.3 bits (181), Expect(2) = e-132
Identities = 40/70 (57%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = -2
Query: 1066 MATATATAAATSSFIGTRLRDA-QPSLGRVQARFGFGIGKKKAAPKKVARPGPGTERPLW 890
MA +A AAA SS +GTR+ P GR A FGFG KKKAAPKK A+ T+RPLW
Sbjct: 1 MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFG--KKKAAPKKSAKKTVTTDRPLW 58
Query: 889 YPGAKAPEWL 860
YPGA +P+WL
Sbjct: 59 YPGAISPDWL 68
>gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 420 bits (1080), Expect(2) = e-131
Identities = 204/222 (91%), Positives = 212/222 (94%)
Frame = -3
Query: 858 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYS 679
DGSLVGDYGFDPFGLGKPAEYLQFD+DSLDQNLAKNLAGDVIGTRTE D KSTPFQPYS
Sbjct: 69 DGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYS 128
Query: 678 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGLPLPFSI 499
EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLG PLPFSI
Sbjct: 129 EVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSI 188
Query: 498 TALIWIEVLVIGYLEFPRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARL 319
+ LIWIEVLVIGY+EF RNAELD EKRLYPGG FFDPLGLAADPEK A LQLAEIKHARL
Sbjct: 189 STLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARL 248
Query: 318 AMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTIIDTFSSS 193
AMVAFLGFAVQAAATGKGPL+NWATHLSDPLHTTIIDTFSSS
Sbjct: 249 AMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
Score = 73.2 bits (178), Expect(2) = e-131
Identities = 39/70 (55%), Positives = 47/70 (66%), Gaps = 1/70 (1%)
Frame = -2
Query: 1066 MATATATAAATSSFIGTRLRDA-QPSLGRVQARFGFGIGKKKAAPKKVARPGPGTERPLW 890
MA +A AAA SS +GTR+ P GR A FGFG KKKAAPKK A+ T+RP+W
Sbjct: 1 MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFG--KKKAAPKKSAKKTVTTDRPVW 58
Query: 889 YPGAKAPEWL 860
YPGA +P+WL
Sbjct: 59 YPGAISPDWL 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,102,404,336
Number of Sequences: 1393205
Number of extensions: 29471632
Number of successful extensions: 237942
Number of sequences better than 10.0: 909
Number of HSP's better than 10.0 without gapping: 122039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202743
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 66163807902
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
