Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005045A_C01 KMC005045A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN15183.1| MADS box protein GHMADS-2 [Gossypium hirsutum] 137 9e-32
gb|AAO20104.1| mads-box transcription factor [Momordica charantia] 130 9e-30
emb|CAA04324.1| MADS-box protein [Malus x domestica] 124 8e-28
pir||T08040 MADS-box protein - cucumber gi|2997615|gb|AAC08529.1... 120 7e-27
gb|AAD01742.1| agamous-like putative transcription factor [Cucum... 120 7e-27
>gb|AAN15183.1| MADS box protein GHMADS-2 [Gossypium hirsutum]
Length = 223
Score = 137 bits (344), Expect = 9e-32
Identities = 67/91 (73%), Positives = 78/91 (85%)
Frame = -3
Query: 505 RGITSIRSKPHEMLLAEIEYFQTREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQ 326
RGIT IRSK HEMLLAEIE+ Q REIELENE++CLRTKI ++ER+QQ NMV+GPELNAIQ
Sbjct: 133 RGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRTKIAEIERLQQANMVTGPELNAIQ 192
Query: 325 ALASRYFFNPPMIEDGTSYPQPPDKKILHLG 233
ALASR FF+P +IE ++Y P DKKILHLG
Sbjct: 193 ALASRNFFSPNVIEHPSAYSHPSDKKILHLG 223
>gb|AAO20104.1| mads-box transcription factor [Momordica charantia]
Length = 227
Score = 130 bits (327), Expect = 9e-30
Identities = 67/91 (73%), Positives = 73/91 (79%)
Frame = -3
Query: 505 RGITSIRSKPHEMLLAEIEYFQTREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQ 326
RGIT IRSK HEMLLAEIEY Q REIELENEN+C+RTKI +VER+QQ NMVSG ELNAIQ
Sbjct: 137 RGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQ 196
Query: 325 ALASRYFFNPPMIEDGTSYPQPPDKKILHLG 233
ALASR FF P M+E G DKK+LHLG
Sbjct: 197 ALASRNFFTPNMMEGGAVTFSHQDKKMLHLG 227
>emb|CAA04324.1| MADS-box protein [Malus x domestica]
Length = 207
Score = 124 bits (310), Expect = 8e-28
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = -3
Query: 505 RGITSIRSKPHEMLLAEIEYFQTREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQ 326
RGIT IRSK HE+LLAEIEYFQ +EIELENEN+ RTK+++VER+QQ NMVSG E+NAIQ
Sbjct: 117 RGITRIRSKKHELLLAEIEYFQKKEIELENENVYFRTKVSEVERLQQANMVSGSEMNAIQ 176
Query: 325 ALASRYFFNPPMIEDGTSYPQPPDKKILHLG 233
ALASR+FF+ MIE G + DKK LHLG
Sbjct: 177 ALASRHFFSQNMIEGGEATFPQQDKKNLHLG 207
>pir||T08040 MADS-box protein - cucumber gi|2997615|gb|AAC08529.1| CUM10
[Cucumis sativus]
Length = 229
Score = 120 bits (302), Expect = 7e-27
Identities = 67/94 (71%), Positives = 75/94 (79%), Gaps = 3/94 (3%)
Frame = -3
Query: 505 RGITSIRSKPHEMLLAEIEYFQTREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQ 326
RGIT IRSK HEMLLAEIEY Q REIELENEN+C+RTKI +VER+QQ NMVSG ELNAIQ
Sbjct: 137 RGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQ 196
Query: 325 ALA-SRYFFNPPMIEDG--TSYPQPPDKKILHLG 233
ALA SR FF+P ++E SY DKK+LHLG
Sbjct: 197 ALANSRNFFSPNIMEPAGPVSYSH-QDKKMLHLG 229
>gb|AAD01742.1| agamous-like putative transcription factor [Cucumis sativus]
Length = 225
Score = 120 bits (302), Expect = 7e-27
Identities = 67/94 (71%), Positives = 75/94 (79%), Gaps = 3/94 (3%)
Frame = -3
Query: 505 RGITSIRSKPHEMLLAEIEYFQTREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQ 326
RGIT IRSK HEMLLAEIEY Q REIELENEN+C+RTKI +VER+QQ NMVSG ELNAIQ
Sbjct: 133 RGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQ 192
Query: 325 ALA-SRYFFNPPMIEDG--TSYPQPPDKKILHLG 233
ALA SR FF+P ++E SY DKK+LHLG
Sbjct: 193 ALANSRNFFSPNIMEPAGPVSYSH-QDKKMLHLG 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,659,979
Number of Sequences: 1393205
Number of extensions: 8115395
Number of successful extensions: 17113
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 16770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17105
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
