Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005039A_C01 KMC005039A_c01
(876 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P26291|UCRI_PEA Cytochrome B6-F complex iron-sulfur subunit, ... 374 e-103
sp|Q02585|UCRB_TOBAC Cytochrome B6-F complex iron-sulfur subunit... 347 1e-94
sp|P30361|UCRA_TOBAC Cytochrome B6-F complex iron-sulfur subunit... 343 3e-93
emb|CAA45705.1| Rieske Fe/S protein of cytochrome b6/f complex [... 338 5e-92
sp|P08980|UCRI_SPIOL Cytochrome B6-F complex iron-sulfur subunit... 337 1e-91
>sp|P26291|UCRI_PEA Cytochrome B6-F complex iron-sulfur subunit, chloroplast precursor
(Rieske iron-sulfur protein) (RISP)
gi|280397|pir||S26199 plastoquinol-plastocyanin
reductase (EC 1.10.99.1) Rieske iron-sulfur protein
precursor - garden pea gi|20832|emb|CAA45151.1|
chloroplast Rieske FeS protein [Pisum sativum]
Length = 230
Score = 374 bits (961), Expect = e-103
Identities = 182/227 (80%), Positives = 195/227 (85%), Gaps = 3/227 (1%)
Frame = -2
Query: 848 TTLSPVTLHSYVLGESGIFCPSQALLVKPARNQMVGKA-KGIRIAGMATSIPADRVPDME 672
TTLSP T G+SGI CPS ALLVKP R QM G+ KG++I ATSIPADRVPDM
Sbjct: 4 TTLSPTTPSQLCSGKSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMS 63
Query: 671 KRKLLNLLLSGAISLPSAGMLVPYATFFAPPGSGSATGGTMAKDAIGNDVVAEQWLKAHG 492
KRK LNLLL GA+SLP+AGMLVPY +F PPGSGS+TGGT+AKDA+GNDVVA +WLK H
Sbjct: 64 KRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHA 123
Query: 491 PGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQYN 312
PGDRTLTQGLKGDPTYLVVEKDRTLAT+ INAVCTHLGCVVPFN AE KFICPCHGSQYN
Sbjct: 124 PGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYN 183
Query: 311 DQGRVVRGPAPLSLALAHCD--VVDGKVVFVPWVETDFRTGDAPWWA 177
DQGRVVRGPAPLSLALAHCD V DGKVVFVPWVETDFRTGDAPWW+
Sbjct: 184 DQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230
>sp|Q02585|UCRB_TOBAC Cytochrome B6-F complex iron-sulfur subunit 2, chloroplast
precursor (Rieske iron-sulfur protein) (RISP)
gi|19997|emb|CAA46809.1| Rieske FeS [Nicotiana tabacum]
Length = 228
Score = 347 bits (890), Expect = 1e-94
Identities = 171/227 (75%), Positives = 192/227 (84%), Gaps = 3/227 (1%)
Frame = -2
Query: 848 TTLSPVTLHSYVLGESGIFCPSQALLVKPAR--NQMVGKAKGIRIAGMATSIPAD-RVPD 678
+TLSPVT +SG+ SQ LL+KP + + +GK K +++ MATSIPAD RVPD
Sbjct: 4 STLSPVT--QLCSSKSGLSSVSQCLLLKPMKINSHGLGKDKRMKVKCMATSIPADDRVPD 61
Query: 677 MEKRKLLNLLLSGAISLPSAGMLVPYATFFAPPGSGSATGGTMAKDAIGNDVVAEQWLKA 498
MEKR L+NLLL GA+SLP+AGMLVPYATFFAPPGSG +GGT AKDA+GNDV+A +WLK
Sbjct: 62 MEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKT 121
Query: 497 HGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQ 318
H PG+RTLTQGLKGDPTYLVVE D TLATYGINAVCTHLGCVVPFN AE KFICPCHGSQ
Sbjct: 122 HPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQ 181
Query: 317 YNDQGRVVRGPAPLSLALAHCDVVDGKVVFVPWVETDFRTGDAPWWA 177
YN+QGRVVRGPAPLSLALAH D+ DGKVVFVPWVETDFRTG+APWWA
Sbjct: 182 YNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228
>sp|P30361|UCRA_TOBAC Cytochrome B6-F complex iron-sulfur subunit 1, chloroplast
precursor (Rieske iron-sulfur protein) (RISP)
gi|282961|pir||S25312 plastoquinol-plastocyanin
reductase (EC 1.10.99.1) Rieske iron-sulfur protein 1
precursor (clone TR3) - common tobacco
gi|19995|emb|CAA46808.1| Rieske FeS [Nicotiana tabacum]
Length = 228
Score = 343 bits (879), Expect = 3e-93
Identities = 169/227 (74%), Positives = 189/227 (82%), Gaps = 3/227 (1%)
Frame = -2
Query: 848 TTLSPVTLHSYVLGESGIFCPSQALLVKPAR--NQMVGKAKGIRIAGMATSIPAD-RVPD 678
+TLSPVT +SG+ SQ LLVKP + + +GK K +++ MATSIPAD RVPD
Sbjct: 4 STLSPVT--QLCSSKSGLSSVSQCLLVKPMKINSHGLGKDKRMKVKCMATSIPADDRVPD 61
Query: 677 MEKRKLLNLLLSGAISLPSAGMLVPYATFFAPPGSGSATGGTMAKDAIGNDVVAEQWLKA 498
MEKR L+NLLL GA+SLP+AGMLVPY TFF PPGSG +GGT AKDA+GNDV+A +WLK
Sbjct: 62 MEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKT 121
Query: 497 HGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQ 318
H PG+RTLTQGLKGDPTYLVVE D TLATYGINAVCTHLGCVVPFN AE KFICPCHGSQ
Sbjct: 122 HPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQ 181
Query: 317 YNDQGRVVRGPAPLSLALAHCDVVDGKVVFVPWVETDFRTGDAPWWA 177
YN+QGRVVRGPAPLSLALAH D+ DGKVVFVPWVETDFRTG+ PWWA
Sbjct: 182 YNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228
>emb|CAA45705.1| Rieske Fe/S protein of cytochrome b6/f complex [Nicotiana tabacum]
Length = 228
Score = 338 bits (868), Expect = 5e-92
Identities = 167/227 (73%), Positives = 188/227 (82%), Gaps = 3/227 (1%)
Frame = -2
Query: 848 TTLSPVTLHSYVLGESGIFCPSQALLVKPAR--NQMVGKAKGIRIAGMATSIPAD-RVPD 678
+TLSPVT +SG+ SQ LLVKP + + +GK K +++ MATSIPAD RVPD
Sbjct: 4 STLSPVT--QLCSSKSGLSSVSQCLLVKPMKINSHGLGKDKRMKVKCMATSIPADDRVPD 61
Query: 677 MEKRKLLNLLLSGAISLPSAGMLVPYATFFAPPGSGSATGGTMAKDAIGNDVVAEQWLKA 498
MEKR L+NLLL GA+SLP+AGMLV Y TFF PPGSG +GGT AKDA+GNDV+A +WLK
Sbjct: 62 MEKRNLMNLLLLGALSLPTAGMLVSYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKT 121
Query: 497 HGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQ 318
H PG+RTLTQGLKGDPTYLVVE D T+ATYGINAVCTHLGCVVPFN AE KFICPCHGSQ
Sbjct: 122 HPPGNRTLTQGLKGDPTYLVVENDGTVATYGINAVCTHLGCVVPFNAAENKFICPCHGSQ 181
Query: 317 YNDQGRVVRGPAPLSLALAHCDVVDGKVVFVPWVETDFRTGDAPWWA 177
YN+QGRVVRGPAPLSLALAH D+ DGKVVFVPWVETDFRTG+ PWWA
Sbjct: 182 YNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228
>sp|P08980|UCRI_SPIOL Cytochrome B6-F complex iron-sulfur subunit, chloroplast precursor
(Rieske iron-sulfur protein) (RISP) gi|81457|pir||S00454
plastoquinol-plastocyanin reductase (EC 1.10.99.1)
Rieske iron-sulfur protein precursor [validated] -
spinach gi|21311|emb|CAA29590.1| Rieske FeS-precursor
[Spinacia oleracea] gi|226151|prf||1412276A rieske FeS
precursor protein
Length = 247
Score = 337 bits (865), Expect = 1e-91
Identities = 159/225 (70%), Positives = 184/225 (81%), Gaps = 2/225 (0%)
Frame = -2
Query: 845 TLSPVTLHSYVLGESGIFCPSQALLVKPARNQMVGKAK--GIRIAGMATSIPADRVPDME 672
TLS T ++G+F PS AL N ++ K + G+++ ATSIPAD VPDM+
Sbjct: 22 TLSSATPSQLCSSKNGMFAPSLALAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQ 81
Query: 671 KRKLLNLLLSGAISLPSAGMLVPYATFFAPPGSGSATGGTMAKDAIGNDVVAEQWLKAHG 492
KR+ LNLLL GA+SLP+ ML+PYA+FF PPG G+ TGGT+AKDA+GNDV+A +WLK H
Sbjct: 82 KRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHA 141
Query: 491 PGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQYN 312
PGDRTLTQGLKGDPTYLVVE D+TLAT+GINAVCTHLGCVVPFN AE KFICPCHGSQYN
Sbjct: 142 PGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYN 201
Query: 311 DQGRVVRGPAPLSLALAHCDVVDGKVVFVPWVETDFRTGDAPWWA 177
+QGRVVRGPAPLSLALAHCDV DGKVVFVPW ETDFRTG+APWW+
Sbjct: 202 NQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 836,008,424
Number of Sequences: 1393205
Number of extensions: 20403411
Number of successful extensions: 67947
Number of sequences better than 10.0: 258
Number of HSP's better than 10.0 without gapping: 64110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67702
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
