Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005037A_C01 KMC005037A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67270.1| unknown [Arabidopsis thaliana] 71 4e-24
ref|NP_564193.1| Kelch repeat containing F-box protein family; p... 71 5e-24
dbj|BAB44022.1| P0684B02.9 [Oryza sativa (japonica cultivar-grou... 46 2e-07
ref|XP_233556.1| similar to plenty-of-prolines-101; POP101; SH3-... 41 0.011
dbj|BAC10714.1| P0431H09.26 [Oryza sativa (japonica cultivar-gro... 40 0.014
>gb|AAM67270.1| unknown [Arabidopsis thaliana]
Length = 394
Score = 70.9 bits (172), Expect(3) = 4e-24
Identities = 29/52 (55%), Positives = 37/52 (70%)
Frame = +3
Query: 393 FSFSLEPLGLEWHHAPPPGVWRVDPVVACVGGCIIVAGGACDFEDEPLAVEM 548
FSFS + L W H PP VWR+DP+VA VG +I+AGG CDFE++ AVE+
Sbjct: 123 FSFSTDAFHLTWQHVSPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVEL 174
Score = 41.6 bits (96), Expect(3) = 4e-24
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +1
Query: 31 KQNNNYTYGDGNKQREKLQSMETSGEAILSHVPLIQLVPARHVSKSWKRAVSSSLRHV 204
K+ NN GD +++ + E+ILS++PL+ L A VSKSW RAV SLR +
Sbjct: 3 KKKNNNNGGDFGEEQRSIDGDIL--ESILSYLPLLDLDSASQVSKSWNRAVFYSLRRL 58
Score = 40.4 bits (93), Expect(3) = 4e-24
Identities = 21/44 (47%), Positives = 28/44 (62%), Gaps = 1/44 (2%)
Frame = +2
Query: 263 TTSHAYDPRSRSWIQIHAPPSS-QSSSPLRSSHSTLIYTLSGHR 391
T + AYDP+S +WI++ S + S RSSHSTL+Y LS R
Sbjct: 79 TMAMAYDPKSEAWIELKTASSPVEHVSVARSSHSTLLYALSPAR 122
>ref|NP_564193.1| Kelch repeat containing F-box protein family; protein id:
At1g23390.1, supported by cDNA: 101865. [Arabidopsis
thaliana] gi|25402982|pir||G86367 protein F28C11.3
[imported] - Arabidopsis thaliana
gi|8778589|gb|AAF79597.1|AC007945_17 F28C11.3
[Arabidopsis thaliana]
gi|9295700|gb|AAF87006.1|AC005292_15 F26F24.26
[Arabidopsis thaliana] gi|21539423|gb|AAM53264.1|
putative knotted-like homeobox protein [Arabidopsis
thaliana] gi|23197636|gb|AAN15345.1| putative
knotted-like homeobox protein [Arabidopsis thaliana]
Length = 394
Score = 70.9 bits (172), Expect(3) = 5e-24
Identities = 29/52 (55%), Positives = 37/52 (70%)
Frame = +3
Query: 393 FSFSLEPLGLEWHHAPPPGVWRVDPVVACVGGCIIVAGGACDFEDEPLAVEM 548
FSFS + L W H PP VWR+DP+VA VG +I+AGG CDFE++ AVE+
Sbjct: 123 FSFSTDAFHLTWQHVAPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVEL 174
Score = 41.2 bits (95), Expect(3) = 5e-24
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 263 TTSHAYDPRSRSWIQIHAPPSS-QSSSPLRSSHSTLIYTLSGHR 391
T + AYDP+S +WI+++ S + S RSSHSTL+Y LS R
Sbjct: 79 TMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPAR 122
Score = 40.4 bits (93), Expect(3) = 5e-24
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 31 KQNNNYTYGDGNKQREKLQSMETSGEAILSHVPLIQLVPARHVSKSWKRAVSSSLRHV 204
K+ NN GD ++ + E+ILS++PL+ L A VSKSW RAV SLR +
Sbjct: 3 KKKNNNNGGDFGEEESSIDGDIL--ESILSYLPLLDLDSACQVSKSWNRAVFYSLRRL 58
>dbj|BAB44022.1| P0684B02.9 [Oryza sativa (japonica cultivar-group)]
gi|20804610|dbj|BAB92301.1| P0421H07.29 [Oryza sativa
(japonica cultivar-group)]
Length = 426
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 35/102 (34%), Positives = 45/102 (43%), Gaps = 20/102 (19%)
Frame = +3
Query: 270 PTRTIHAHAPGFRSTRRPPVS---LPPPSARHTPLSSTPSQA----------------TG 392
P +H H R+ P S + P+ARH TPS +G
Sbjct: 87 PWLVVHLHGRRRRTAAYDPHSGAWVTVPAARH----DTPSHVRLVRGAGGDRVCALSLSG 142
Query: 393 FSFSLEPLGLEWHHA-PPPGVWRVDPVVACVGGCIIVAGGAC 515
+ S +PLG + A PGVWRVDPV A VG ++ GGAC
Sbjct: 143 LAVSGDPLGKDVCVALKAPGVWRVDPVFAAVGDRVVALGGAC 184
Score = 30.4 bits (67), Expect(2) = 2e-07
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 55 GDGNKQREKLQSMETSGEAILSHVPLIQLVPARHVSKSWKRAVSSSLRHVSPVRPR 222
GDG ++ E+++ VP L + VS+ W RAV ++LR RPR
Sbjct: 33 GDGVASLGEMDLYGDVLESVVERVPAADLAASARVSREWLRAVRAALRR----RPR 84
>ref|XP_233556.1| similar to plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus] [Rattus norvegicus]
Length = 132
Score = 40.8 bits (94), Expect = 0.011
Identities = 27/88 (30%), Positives = 37/88 (41%), Gaps = 8/88 (9%)
Frame = +3
Query: 225 SRCTPRAPGPRT*QPPTRTIH---AHAPGFRSTRRPPVSLPPPSARHTPLSSTPSQATGF 395
SR P+ P RT PP +T + +P R R + PPP RH+P ++A
Sbjct: 36 SRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKS 95
Query: 396 SFSLEP-----LGLEWHHAPPPGVWRVD 464
S+ P G H P G+W D
Sbjct: 96 RVSVSPGRTSGKGTNTTHFVPFGIWDAD 123
>dbj|BAC10714.1| P0431H09.26 [Oryza sativa (japonica cultivar-group)]
Length = 199
Score = 40.4 bits (93), Expect = 0.014
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Frame = +3
Query: 126 ASHPACASSSRVKVLEACRV*LPPPRQPRQAEGSRCTPRAPGPRT*QPP---TRTIHAHA 296
A PA AS++ V+ + R R+ RC PR P P + P + T H HA
Sbjct: 36 ALSPAAASAAAVRAIA---------RHDRRRHSRRCRPRPP-PSSASPAAVCSVTGHGHA 85
Query: 297 PGFRSTRRPPVSLPPPSARHTPLSSTPSQATGFSFSLEPLGLEW----HHAPPPGVWRVD 464
R RRPP PPP P + +P+ AT ++ GL + H P P + V
Sbjct: 86 VARRPRRRPP--RPPP-----PSALSPAAATAAVRAIAGRGLSYRSLRRHPPRPSLPSVS 138
Query: 465 PVVA 476
+ A
Sbjct: 139 SLTA 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,782,394
Number of Sequences: 1393205
Number of extensions: 17554650
Number of successful extensions: 90559
Number of sequences better than 10.0: 701
Number of HSP's better than 10.0 without gapping: 71769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87728
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
