Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005035A_C01 KMC005035A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191873.1| mRNA binding protein precursor - like; protein ... 277 6e-74
pir||T52071 mRNA-binding protein precursor [imported] - tomato ... 273 1e-72
gb|AAD21574.3| mRNA binding protein precursor [Lycopersicon escu... 273 1e-72
pir||T09213 mRNA-binding protein CSP41 precursor, chloroplast - ... 271 5e-72
dbj|BAC16410.1| putative mRNA binding protein precursor [Oryza s... 234 6e-61
>ref|NP_191873.1| mRNA binding protein precursor - like; protein id: At3g63140.1,
supported by cDNA: gi_16226200, supported by cDNA:
gi_16649034 [Arabidopsis thaliana]
gi|11358514|pir||T48103 mRNA binding protein CSP41
homolog T20O10.240 [similarity] - Arabidopsis thaliana
gi|7573443|emb|CAB87759.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|16226201|gb|AAL16101.1|AF428269_1
AT3g63140/T20O10_240 [Arabidopsis thaliana]
gi|16649035|gb|AAL24369.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|22136252|gb|AAM91204.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
Length = 406
Score = 277 bits (709), Expect = 6e-74
Identities = 137/162 (84%), Positives = 144/162 (88%)
Frame = -1
Query: 598 NNKDNEEWFXDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVS 419
NNKD EEWF DRIVRDR VPIP SGLQLTNI+HVRDLSSMLT AV NP+AA+ IFNCVS
Sbjct: 243 NNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVS 302
Query: 418 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWS 239
DRAVTLDGMAKLCA AAG+ V IVHYDPKAIG+DAKKAF FRN+HFYAEPRAAK LGW
Sbjct: 303 DRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWE 362
Query: 238 STTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPV 113
S TNLPEDLKERFEEY+KIGRDKK IKFELDDKILEALK PV
Sbjct: 363 SKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPV 404
>pir||T52071 mRNA-binding protein precursor [imported] - tomato (fragment)
Length = 418
Score = 273 bits (698), Expect = 1e-72
Identities = 132/162 (81%), Positives = 146/162 (89%)
Frame = -1
Query: 598 NNKDNEEWFXDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVS 419
NNKD EEWF DRIVR RPV IP SG+QLTNI+HVRDLSSMLTLAV+NP AA+ IFNCVS
Sbjct: 255 NNKDCEEWFFDRIVRGRPVLIPGSGMQLTNISHVRDLSSMLTLAVQNPAAASGRIFNCVS 314
Query: 418 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWS 239
DRAVTLDGMA+LCA+AAG V IVHYDPKA+G+DAKKAFPFRN+HFYAEPRA LGWS
Sbjct: 315 DRAVTLDGMARLCAKAAGSSVEIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAPNEILGWS 374
Query: 238 STTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPV 113
+TTNLPEDLKER+EEY+KIGRDKK +KFELDDKILE+LKVPV
Sbjct: 375 ATTNLPEDLKERYEEYVKIGRDKKEMKFELDDKILESLKVPV 416
>gb|AAD21574.3| mRNA binding protein precursor [Lycopersicon esculentum]
Length = 407
Score = 273 bits (698), Expect = 1e-72
Identities = 132/162 (81%), Positives = 146/162 (89%)
Frame = -1
Query: 598 NNKDNEEWFXDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVS 419
NNKD EEWF DRIVR RPV IP SG+QLTNI+HVRDLSSMLTLAV+NP AA+ IFNCVS
Sbjct: 244 NNKDCEEWFFDRIVRGRPVLIPGSGMQLTNISHVRDLSSMLTLAVQNPAAASGRIFNCVS 303
Query: 418 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWS 239
DRAVTLDGMA+LCA+AAG V IVHYDPKA+G+DAKKAFPFRN+HFYAEPRA LGWS
Sbjct: 304 DRAVTLDGMARLCAKAAGSSVEIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAPNEILGWS 363
Query: 238 STTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPV 113
+TTNLPEDLKER+EEY+KIGRDKK +KFELDDKILE+LKVPV
Sbjct: 364 ATTNLPEDLKERYEEYVKIGRDKKEMKFELDDKILESLKVPV 405
>pir||T09213 mRNA-binding protein CSP41 precursor, chloroplast - spinach
(fragment) gi|1532135|gb|AAC49424.1| chloroplast
mRNA-binding protein CSP41 precursor
Length = 415
Score = 271 bits (693), Expect = 5e-72
Identities = 130/162 (80%), Positives = 146/162 (89%)
Frame = -1
Query: 598 NNKDNEEWFXDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVS 419
NNKD EEWF DRIVRDRPV IP SG+QLTNI+HV+DLSSMLT+AVENP AA+ IFNCVS
Sbjct: 253 NNKDCEEWFFDRIVRDRPVLIPGSGMQLTNISHVKDLSSMLTVAVENPSAASGNIFNCVS 312
Query: 418 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWS 239
DRAVTLDGMAKLCA+AAG PV I+HY+PKA+G+DAKKAFPFRN+HFYAEPRAA+ LGW
Sbjct: 313 DRAVTLDGMAKLCAKAAGLPVKILHYEPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWK 372
Query: 238 STTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPV 113
+TT LPEDLKER+EEY+KIGRDKK IKFE+DDKILEAL V V
Sbjct: 373 ATTYLPEDLKERYEEYVKIGRDKKDIKFEIDDKILEALNVSV 414
>dbj|BAC16410.1| putative mRNA binding protein precursor [Oryza sativa (japonica
cultivar-group)]
Length = 416
Score = 234 bits (597), Expect = 6e-61
Identities = 111/157 (70%), Positives = 129/157 (81%)
Frame = -1
Query: 598 NNKDNEEWFXDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVS 419
NNKD EEWF DRIVR RPVPIP SG+Q+TNI+HVRDL+SM+ LAVE+P AA IFNCVS
Sbjct: 259 NNKDCEEWFFDRIVRGRPVPIPGSGMQVTNISHVRDLASMVALAVESPGAAAGRIFNCVS 318
Query: 418 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWS 239
DRAVT +G+ K+CA AAG I+HYDP A+G+DAKKAFPFRN+HFYAEPRAAK LGW
Sbjct: 319 DRAVTFNGLVKMCAAAAGAQPEILHYDPAAVGVDAKKAFPFRNMHFYAEPRAAKEVLGWR 378
Query: 238 STTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEA 128
S+TNLPEDLKERF EY GR +K + F+LDDKI+ A
Sbjct: 379 SSTNLPEDLKERFAEYASSGRGQKEMSFDLDDKIIAA 415
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,193,952
Number of Sequences: 1393205
Number of extensions: 10506974
Number of successful extensions: 24925
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 24225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24889
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
