Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005033A_C01 KMC005033A_c01
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178050.1| hypothetical protein common family; protein id:... 51 1e-05
gb|AAM51555.1| metacaspase 1 [Lycopersicon esculentum] 49 8e-05
ref|NP_178051.1| hypothetical protein common family; protein id:... 47 3e-04
gb|AAD13216.1| latex-abundant protein [Hevea brasiliensis] 44 0.002
gb|AAO72653.1| latex-abundant protein-like protein [Oryza sativa... 44 0.003
>ref|NP_178050.1| hypothetical protein common family; protein id: At1g79320.1
[Arabidopsis thaliana] gi|7487918|pir||T01023
hypothetical protein YUP8H12R.6 - Arabidopsis thaliana
gi|3152597|gb|AAC17078.1| Contains similarity to S.
cerevisiae hypothetical protein YOR197w, gb|Z75105.
[Arabidopsis thaliana]
Length = 368
Score = 51.2 bits (121), Expect = 1e-05
Identities = 25/61 (40%), Positives = 36/61 (58%)
Frame = -1
Query: 462 SSTTTTTPPNPHKLYGVFTTIILDIIEETQGRVTSVDLARKAMDKLRMQGIHQNPGLHSN 283
+S+ + P +P YG T I II ET+G++++ DL KA LR QG Q PGL+ N
Sbjct: 299 TSSDASPPGHPELAYGALTNAIQIIIGETKGKISNKDLVLKARKLLRKQGFDQRPGLYCN 358
Query: 282 E 280
+
Sbjct: 359 D 359
>gb|AAM51555.1| metacaspase 1 [Lycopersicon esculentum]
Length = 409
Score = 48.5 bits (114), Expect = 8e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = -1
Query: 456 TTTTTPPNPHKLYGVFTTIILDIIEETQGRVTSVDLARKAMDKLRMQGIHQNPGLHSNEH 277
T+ P + YG + I +I+ E+ G VT+ +L KA K++ QG Q PGL+ ++H
Sbjct: 342 TSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDH 401
Query: 276 H 274
H
Sbjct: 402 H 402
>ref|NP_178051.1| hypothetical protein common family; protein id: At1g79330.1
[Arabidopsis thaliana] gi|7487917|pir||T01022
hypothetical protein YUP8H12R.5 - Arabidopsis thaliana
gi|3152557|gb|AAC17038.1| Contains similarity to S.
cerevisiae hypothetical protein YOR197w, gb|Z75105. EST
gb|T76227 comes from this gene. [Arabidopsis thaliana]
Length = 410
Score = 46.6 bits (109), Expect = 3e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = -1
Query: 462 SSTTTTTPPNPHKLYGVFTTIILDIIEETQGRVTSVDLARKAMDKLRMQGIHQNPGLHSN 283
+S + +P YG FT + I+EET+G +T +L KA L+ QG Q PGL+ +
Sbjct: 341 TSADASPQGHPEMAYGAFTNAVQIILEETKGMITYKELVLKARKLLKKQGFSQRPGLYCS 400
Query: 282 E 280
+
Sbjct: 401 D 401
>gb|AAD13216.1| latex-abundant protein [Hevea brasiliensis]
Length = 417
Score = 43.9 bits (102), Expect = 0.002
Identities = 24/56 (42%), Positives = 32/56 (56%)
Frame = -1
Query: 420 YGVFTTIILDIIEETQGRVTSVDLARKAMDKLRMQGIHQNPGLHSNEHHHAYASFL 253
YG + I II ET G VT+ +L KA L+ QG Q PGL+ ++ H ASF+
Sbjct: 362 YGALSNAIQTIIAETDGAVTNQELVLKARKMLKKQGFTQKPGLYCSD-DHVEASFV 416
>gb|AAO72653.1| latex-abundant protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 420
Score = 43.5 bits (101), Expect = 0.003
Identities = 24/67 (35%), Positives = 35/67 (51%)
Frame = -1
Query: 462 SSTTTTTPPNPHKLYGVFTTIILDIIEETQGRVTSVDLARKAMDKLRMQGIHQNPGLHSN 283
+S TTP YG + I I+ E GRVT+ +L +A + L QG Q PGL+ +
Sbjct: 353 TSADATTPKGVS--YGALSNAIQTILSEKSGRVTNKELVLRARELLSKQGYTQQPGLYCS 410
Query: 282 EHHHAYA 262
+ H + A
Sbjct: 411 DKHTSVA 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,460,496
Number of Sequences: 1393205
Number of extensions: 12855737
Number of successful extensions: 33951
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 31928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33875
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
