Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005032A_C01 KMC005032A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84680 hypothetical protein At2g28110 [imported] - Arabidop... 82 3e-15
gb|AAN62780.1| Unknown protein [Oryza sativa (japonica cultivar-... 82 5e-15
ref|NP_197685.1| putative protein; protein id: At5g22940.1 [Arab... 69 4e-11
ref|NP_174064.1| unknown protein; protein id: At1g27440.1 [Arabi... 43 0.003
dbj|BAB10084.1| gb|AAC80624.1~gene_id:MAC9.17~strong similarity ... 42 0.004
>pir||H84680 hypothetical protein At2g28110 [imported] - Arabidopsis thaliana
gi|4063747|gb|AAC98455.1| hypothetical protein
[Arabidopsis thaliana]
Length = 448
Score = 82.4 bits (202), Expect = 3e-15
Identities = 44/66 (66%), Positives = 51/66 (76%)
Frame = -2
Query: 537 AEKDVGRLDRILERVVATNLSVIQWNLWDPKTRQALLFNNEVQVGDATWQVLLSLSQKLG 358
AE+DVG+L ILE V ATNLSVIQ NL DP R+AL+FN + GDATWQVL +LS+KL
Sbjct: 379 AERDVGKLGDILEHVAATNLSVIQRNLEDPSVRRALMFNVPSREGDATWQVLEALSKKLN 438
Query: 357 RSHRRS 340
RS RRS
Sbjct: 439 RSVRRS 444
>gb|AAN62780.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 449
Score = 81.6 bits (200), Expect = 5e-15
Identities = 40/69 (57%), Positives = 50/69 (71%)
Frame = -2
Query: 537 AEKDVGRLDRILERVVATNLSVIQWNLWDPKTRQALLFNNEVQVGDATWQVLLSLSQKLG 358
AEKDV L+ +L+ VVATNL+VIQ NLWDP R+AL+FN ++ GDATWQVL L L
Sbjct: 378 AEKDVASLEMVLDHVVATNLTVIQKNLWDPVKRKALVFNRPMEEGDATWQVLRELEILLD 437
Query: 357 RSHRRSINT 331
RS RR + +
Sbjct: 438 RSQRRHVES 446
>ref|NP_197685.1| putative protein; protein id: At5g22940.1 [Arabidopsis thaliana]
gi|10177241|dbj|BAB10615.1|
gb|AAC98455.1~gene_id:MRN17.17~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 498
Score = 68.9 bits (167), Expect = 4e-11
Identities = 38/67 (56%), Positives = 49/67 (72%), Gaps = 1/67 (1%)
Frame = -2
Query: 537 AEKDVGRLDRILERVVATNLSVIQWNLWDPKTRQALLFNNEVQVGDATWQVLLSLSQKL- 361
AEKDV L ++LE V ATNLS IQ NL +P ++ALL+N ++ GDATW +L SL +KL
Sbjct: 422 AEKDVRNLRKVLEHVAATNLSAIQRNLHEPVFKRALLYNVPMKEGDATWHILESLWRKLD 481
Query: 360 GRSHRRS 340
RS+RRS
Sbjct: 482 DRSYRRS 488
>ref|NP_174064.1| unknown protein; protein id: At1g27440.1 [Arabidopsis thaliana]
gi|9802541|gb|AAF99743.1|AC004557_22 F17L21.23
[Arabidopsis thaliana]
Length = 412
Score = 42.7 bits (99), Expect = 0.003
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = -2
Query: 537 AEKDVGRLDRILERVVATNLSVIQWNLWDPKTRQALLFNNEVQVGDATWQVLLSLSQKLG 358
AEKDV LD IL + + Q L +P ++A+LF Q GDA Q+L L++KL
Sbjct: 326 AEKDVPELDTILTSIPTEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKL- 384
Query: 357 RSHRRSINTVSGE 319
H +SI +GE
Sbjct: 385 -PHDKSIYLKTGE 396
>dbj|BAB10084.1| gb|AAC80624.1~gene_id:MAC9.17~strong similarity to unknown protein
[Arabidopsis thaliana] gi|23821294|dbj|BAC20929.1|
NpGUT1 homolog [Arabidopsis thaliana]
Length = 341
Score = 42.4 bits (98), Expect = 0.004
Identities = 30/72 (41%), Positives = 38/72 (52%)
Frame = -2
Query: 534 EKDVGRLDRILERVVATNLSVIQWNLWDPKTRQALLFNNEVQVGDATWQVLLSLSQKLGR 355
EKDV LD IL + + Q L +P +QA+LF Q GDA QVL L++KL
Sbjct: 256 EKDVPYLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKL-- 313
Query: 354 SHRRSINTVSGE 319
H RS+ GE
Sbjct: 314 PHERSVYLRPGE 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,094,061
Number of Sequences: 1393205
Number of extensions: 11995358
Number of successful extensions: 32091
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32077
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
