Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005031A_C01 KMC005031A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176037.1| unknown protein; protein id: At1g56420.1 [Arabi... 61 1e-08
gb|AAG38547.1|AF309805_12 Yer049wp-like protein [Pneumocystis ca... 36 0.46
gb|AAB59727.1| interleukin 4 receptor 33 2.3
gb|EAA16311.1| hypothetical protein [Plasmodium yoelii yoelii] 33 3.0
gb|AAK13090.1|AC078839_6 Hypothetical protein [Oryza sativa] 33 3.0
>ref|NP_176037.1| unknown protein; protein id: At1g56420.1 [Arabidopsis thaliana]
gi|25373132|pir||A96606 unknown protein F13N6.17
[imported] - Arabidopsis thaliana
gi|12323035|gb|AAG51512.1|AC058785_15 unknown protein
[Arabidopsis thaliana]
Length = 183
Score = 60.8 bits (146), Expect = 1e-08
Identities = 33/69 (47%), Positives = 44/69 (62%), Gaps = 3/69 (4%)
Frame = -1
Query: 617 NGLGKEISETVERVFCRLSGQEPPLFPLPNGEPQP---DQEVDSGKEKGKGKQKEKANAN 447
+GLGKEI+ETVERVFC LSGQEPP + N E P D+E + K+ K K K+++ +
Sbjct: 94 DGLGKEINETVERVFCHLSGQEPPFYSSSNVEKTPMEIDKETEV-KDSSKTKPKKRSLSE 152
Query: 446 ANTIHSIQE 420
N+ I E
Sbjct: 153 VNSSEGIDE 161
>gb|AAG38547.1|AF309805_12 Yer049wp-like protein [Pneumocystis carinii f. sp. carinii]
Length = 490
Score = 35.8 bits (81), Expect = 0.46
Identities = 26/71 (36%), Positives = 37/71 (51%)
Frame = +1
Query: 388 LLPNLFQSSFFS*ME*IVFAFAFAFSFCFPFPFSFPLSTS*SGCGSPFGSGNNGGSWPLN 567
LL NLFQSSFFS M+ + F +F+F F + +F L S + G NGG
Sbjct: 381 LLQNLFQSSFFSSMDSFLHHFN-SFNFYFTYSAAFVLPPS-----GHWNHGQNGGYCLYM 434
Query: 568 RQNTLSTVSLI 600
NT++ +L+
Sbjct: 435 EPNTITHSTLL 445
>gb|AAB59727.1| interleukin 4 receptor
Length = 810
Score = 33.5 bits (75), Expect = 2.3
Identities = 24/86 (27%), Positives = 36/86 (40%), Gaps = 9/86 (10%)
Frame = +2
Query: 308 KSLKLIKAICQNLPSGAGSEDLVAVVICFQIYFRVASFLEW---------SELCLHLHLP 460
K L + + L +G+GS ++ CF Y R ++ EW S+LCLH L
Sbjct: 7 KFLTSVGCLILLLVTGSGSIKVLGEPTCFSDYIRTST-CEWFLDSAVDCSSQLCLHYRLM 65
Query: 461 FLSVFPSLFLFRCQPLDQVVVLHLEV 538
F +L V V H+E+
Sbjct: 66 FFEFSENLICIPRNSASTVCVCHMEM 91
>gb|EAA16311.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2302
Score = 33.1 bits (74), Expect = 3.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = -2
Query: 544 YFHF----QMENHNLIKRLTAEKKKGRENRKKRQMQMQTQFTPFKKRSYSEINLEADDNC 377
Y HF +NH+L++ L +K N K + + KKR E N+E + C
Sbjct: 1402 YNHFVSKNSRKNHSLLRILAKQKVISNLNDKISDKEWPQVHSYLKKRWSRETNIELNWAC 1461
Query: 376 DQVL*SSTTWKVLANRLY 323
D +L W + N Y
Sbjct: 1462 DPLLYEELEWYLSTNNEY 1479
>gb|AAK13090.1|AC078839_6 Hypothetical protein [Oryza sativa]
Length = 355
Score = 33.1 bits (74), Expect = 3.0
Identities = 18/66 (27%), Positives = 39/66 (58%), Gaps = 2/66 (3%)
Frame = -2
Query: 514 LIKRLTAEKKKGRENRKKRQMQMQTQFTPFKKRSYS--EINLEADDNCDQVL*SSTTWKV 341
L++R+ K++G + K + ++++ PFK+RS++ E + + D NC+ S +K+
Sbjct: 197 LMERMLKFKEQGLQGEKITRHFIKSRLAPFKERSHTAFEFDGKNDPNCENP--ESLEFKI 254
Query: 340 LANRLY 323
+ R+Y
Sbjct: 255 MKKRIY 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,275,991
Number of Sequences: 1393205
Number of extensions: 11504497
Number of successful extensions: 39139
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 34744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38567
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
