Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005027A_C05 KMC005027A_c05
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S04125 chlorophyll a/b-binding protein type III precursor -... 180 2e-44
sp|P27522|CB13_LYCES Chlorophyll A-B binding protein 8, chloropl... 180 2e-44
pir||T06411 probable chlorophyll a/b-binding protein type III pr... 177 1e-43
ref|NP_176347.1| light-harvesting chlorophyll a/b binding protei... 175 6e-43
gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein 175 6e-43
>pir||S04125 chlorophyll a/b-binding protein type III precursor - tomato
gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 180 bits (456), Expect = 2e-44
Identities = 104/168 (61%), Positives = 118/168 (69%), Gaps = 14/168 (8%)
Frame = -1
Query: 698 AGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMAK 519
AGLIP+ETAL WFQTGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRRFQDWAKPGSM K
Sbjct: 123 AGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGK 182
Query: 518 QYFLGLEKGLGGS---A*PGVPL-----AGLSSTLLGSVRMRNP*HGS*SSRKLRMEGWP 363
QYFLGLEKGLGGS A PG PL G + ++++ +G +L M
Sbjct: 183 QYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNG-----RLAM---- 233
Query: 362 CYAILGYFIQ------GPCHWCWALAQTLLDHLADPVHHHVLTSLQFH 237
AILGYFIQ GP Q LLDHLADPV+++VLTSL+FH
Sbjct: 234 -LAILGYFIQALVTGVGP-------YQNLLDHLADPVNNNVLTSLKFH 273
>sp|P27522|CB13_LYCES Chlorophyll A-B binding protein 8, chloroplast precursor (LHCI type
III CAB-8) gi|19182|emb|CAA33330.1| Type III chlorophyll
a/b-binding protein [Lycopersicon esculentum]
Length = 273
Score = 180 bits (456), Expect = 2e-44
Identities = 104/168 (61%), Positives = 118/168 (69%), Gaps = 14/168 (8%)
Frame = -1
Query: 698 AGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMAK 519
AGLIP+ETAL WFQTGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRRFQDWAKPGSM K
Sbjct: 123 AGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGK 182
Query: 518 QYFLGLEKGLGGS---A*PGVPL-----AGLSSTLLGSVRMRNP*HGS*SSRKLRMEGWP 363
QYFLGLEKGLGGS A PG PL G + ++++ +G +L M
Sbjct: 183 QYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNG-----RLAM---- 233
Query: 362 CYAILGYFIQ------GPCHWCWALAQTLLDHLADPVHHHVLTSLQFH 237
AILGYFIQ GP Q LLDHLADPV+++VLTSL+FH
Sbjct: 234 -LAILGYFIQALVTGVGP-------YQNLLDHLADPVNNNVLTSLKFH 273
>pir||T06411 probable chlorophyll a/b-binding protein type III precursor -
garden pea chloroplast gi|309673|gb|AAA84545.1| light
harvesting protein
Length = 275
Score = 177 bits (450), Expect = 1e-43
Identities = 98/161 (60%), Positives = 112/161 (68%), Gaps = 8/161 (4%)
Frame = -1
Query: 695 GLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMAKQ 516
GLIP+ETAL WFQTGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRRFQDWAKPGSM KQ
Sbjct: 126 GLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 185
Query: 515 YFLGLEKGLGGSA*PGVPLA--------GLSSTLLGSVRMRNP*HGS*SSRKLRMEGWPC 360
YFLGLEKG GGS P P G L ++++ +G +L M
Sbjct: 186 YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNG-----RLAM----- 235
Query: 359 YAILGYFIQGPCHWCWALAQTLLDHLADPVHHHVLTSLQFH 237
AILGYFIQG Q LLDH+ADPV+++VLTSL+FH
Sbjct: 236 LAILGYFIQGLVTGVGPY-QNLLDHVADPVNNNVLTSLKFH 275
>ref|NP_176347.1| light-harvesting chlorophyll a/b binding protein; protein id:
At1g61520.1, supported by cDNA: 25124., supported by
cDNA: gi_16649018, supported by cDNA: gi_20260043,
supported by cDNA: gi_430946 [Arabidopsis thaliana]
gi|25299020|pir||E96640 PSI type III chlorophyll
a/b-binding protein [imported] - Arabidopsis thaliana
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 175 bits (443), Expect = 6e-43
Identities = 98/162 (60%), Positives = 110/162 (67%), Gaps = 8/162 (4%)
Frame = -1
Query: 698 AGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMAK 519
AGLIP ETALPWFQTGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRR QDW PGSM K
Sbjct: 123 AGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGK 182
Query: 518 QYFLGLEKGLGGSA*PGVPLA--------GLSSTLLGSVRMRNP*HGS*SSRKLRMEGWP 363
QYFLGLEKGL GS P P G L ++++ +G +L M
Sbjct: 183 QYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNG-----RLAM---- 233
Query: 362 CYAILGYFIQGPCHWCWALAQTLLDHLADPVHHHVLTSLQFH 237
AILGYFIQG Q LLDHLADPV+++VLTSL+FH
Sbjct: 234 -LAILGYFIQGLVTGVGPY-QNLLDHLADPVNNNVLTSLKFH 273
>gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein
Length = 273
Score = 175 bits (443), Expect = 6e-43
Identities = 98/162 (60%), Positives = 110/162 (67%), Gaps = 8/162 (4%)
Frame = -1
Query: 698 AGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMAK 519
AGLIP ETALPWFQTGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRR QDW PGSM K
Sbjct: 123 AGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGK 182
Query: 518 QYFLGLEKGLGGSA*PGVPLA--------GLSSTLLGSVRMRNP*HGS*SSRKLRMEGWP 363
QYFLGLEKGL GS P P G L ++++ +G +L M
Sbjct: 183 QYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNG-----RLAM---- 233
Query: 362 CYAILGYFIQGPCHWCWALAQTLLDHLADPVHHHVLTSLQFH 237
AILGYFIQG Q LLDHLADPV+++VLTSL+FH
Sbjct: 234 -LAILGYFIQGLVTGVGPY-QNLLDHLADPVNNNVLTSLKFH 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,627,794
Number of Sequences: 1393205
Number of extensions: 18373184
Number of successful extensions: 70826
Number of sequences better than 10.0: 342
Number of HSP's better than 10.0 without gapping: 63362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70317
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
