Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005024A_C03 KMC005024A_c03
(797 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai... 279 7e-81
gb|AAA81328.1| ribulose-1,5-bisphosphate carboxylase small subun... 265 4e-79
gb|AAG24884.1|AF303941_1 ribulose-1,5-bisphosphate carboxylase s... 264 9e-79
sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase small cha... 263 2e-78
gb|AAG24883.1|AF303940_1 ribulose-1,5-bisphosphate carboxylase s... 261 7e-78
>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain, chloroplast
precursor (RuBisCO small subunit) gi|7436564|pir||T09336
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain - alfalfa gi|3044116|gb|AAC13293.1|
ribulose-1,5-bisphosphate carboxylase small subunit
[Medicago sativa]
Length = 180
Score = 279 bits (713), Expect(2) = 7e-81
Identities = 126/148 (85%), Positives = 137/148 (92%)
Frame = -3
Query: 696 AGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIR 517
AGFPVT+K NNDITSIASNGGRVNCMQVWPP+GKKKFETLSYLPPLT EQLAKEVEYLIR
Sbjct: 33 AGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIR 92
Query: 516 KGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAYP 337
KGW+PCLEFE EKGFVYRENH+SPGYYDGRYWTMW+LP+FG TD+SQVLKEL + K YP
Sbjct: 93 KGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYP 152
Query: 336 NAFIRIIGFDNKRQVQCISFIAHRPEGY 253
++FIRIIGFDN RQVQCISFIAH P+ Y
Sbjct: 153 DSFIRIIGFDNVRQVQCISFIAHTPKNY 180
Score = 44.7 bits (104), Expect(2) = 7e-81
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Frame = -2
Query: 775 SMISSPAVTTVNHA-----NMVAPFTGLKSSGWFPSYKK 674
++ISS AVTTVN A N+VAPFTGLKSS FP KK
Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKK 40
>gb|AAA81328.1| ribulose-1,5-bisphosphate carboxylase small subunit [Glycine max]
gi|10946375|gb|AAG24882.1|AF303939_1
ribulose-1,5-bisphosphate carboxylase small subunit
rbcS1 [Glycine max]
Length = 178
Score = 265 bits (678), Expect(2) = 4e-79
Identities = 124/149 (83%), Positives = 135/149 (90%)
Frame = -3
Query: 699 VAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLI 520
+AGFP TRK NNDITSIASNGGRV CMQVWPP+GKKKFETLSYLP L QLAKEVEYL+
Sbjct: 31 MAGFP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLL 89
Query: 519 RKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAY 340
RKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFG TDASQVLKEL+EAK AY
Sbjct: 90 RKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAY 149
Query: 339 PNAFIRIIGFDNKRQVQCISFIAHRPEGY 253
PN FIRIIGFDN RQVQCISFIA++P G+
Sbjct: 150 PNGFIRIIGFDNVRQVQCISFIAYKPPGF 178
Score = 52.4 bits (124), Expect(2) = 4e-79
Identities = 29/38 (76%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = -2
Query: 784 MASSMISSPAVTTVNH--ANMVAPFTGLKSSGWFPSYK 677
MASSMISSPAVTTVN A MVAPFTGLKS FP+ K
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRK 38
>gb|AAG24884.1|AF303941_1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS3 [Glycine
max]
Length = 178
Score = 264 bits (675), Expect(2) = 9e-79
Identities = 124/148 (83%), Positives = 134/148 (89%)
Frame = -3
Query: 699 VAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLI 520
+AGFP TRK NNDITSIASNGGRV CMQVWPP+GKKKFETLSYLP L QLAKEVEYL+
Sbjct: 31 MAGFP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLL 89
Query: 519 RKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAY 340
RKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFG TDASQVLKEL+EAK AY
Sbjct: 90 RKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAY 149
Query: 339 PNAFIRIIGFDNKRQVQCISFIAHRPEG 256
PN FIRIIGFDN RQVQCISFIA++P G
Sbjct: 150 PNGFIRIIGFDNVRQVQCISFIAYKPPG 177
Score = 52.4 bits (124), Expect(2) = 9e-79
Identities = 29/38 (76%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = -2
Query: 784 MASSMISSPAVTTVNH--ANMVAPFTGLKSSGWFPSYK 677
MASSMISSPAVTTVN A MVAPFTGLKS FP+ K
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRK 38
>sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase small chain 1, chloroplast
precursor (RuBisCO small subunit 1) gi|68053|pir||RKSYS
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain precursor SRS1 - soybean gi|18742|emb|CAA23736.1|
rubpcase [Glycine max]
Length = 178
Score = 263 bits (672), Expect(2) = 2e-78
Identities = 124/149 (83%), Positives = 134/149 (89%)
Frame = -3
Query: 699 VAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLI 520
+AGFP TRK NNDITSIASNGGRV CMQVWPPIGKKKFETLSYLP L QLAKEVEYL+
Sbjct: 31 MAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLL 89
Query: 519 RKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAY 340
RKGW+PCLEFE E GFVYRE+++SP YYDGRYWTMWKLPMFG TDASQVLKEL+EAK AY
Sbjct: 90 RKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAY 149
Query: 339 PNAFIRIIGFDNKRQVQCISFIAHRPEGY 253
PN FIRIIGFDN RQVQCISFIA++P G+
Sbjct: 150 PNGFIRIIGFDNVRQVQCISFIAYKPPGF 178
Score = 52.4 bits (124), Expect(2) = 2e-78
Identities = 29/38 (76%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = -2
Query: 784 MASSMISSPAVTTVNH--ANMVAPFTGLKSSGWFPSYK 677
MASSMISSPAVTTVN A MVAPFTGLKS FP+ K
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRK 38
>gb|AAG24883.1|AF303940_1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 [Glycine
max]
Length = 178
Score = 261 bits (667), Expect(2) = 7e-78
Identities = 122/149 (81%), Positives = 133/149 (88%)
Frame = -3
Query: 699 VAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLI 520
+AGFP TRK NND SIASNGGRV CMQVWPP+GKKKFETLSYLP L QLAKEVEYL+
Sbjct: 31 MAGFP-TRKTNNDTISIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLL 89
Query: 519 RKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAY 340
RKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFG TDASQVLKEL+EAK AY
Sbjct: 90 RKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAY 149
Query: 339 PNAFIRIIGFDNKRQVQCISFIAHRPEGY 253
PN FIRIIGFDN RQVQCISFIA++P G+
Sbjct: 150 PNGFIRIIGFDNVRQVQCISFIAYKPPGF 178
Score = 52.4 bits (124), Expect(2) = 7e-78
Identities = 29/38 (76%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = -2
Query: 784 MASSMISSPAVTTVNH--ANMVAPFTGLKSSGWFPSYK 677
MASSMISSPAVTTVN A MVAPFTGLKS FP+ K
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRK 38
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 775,049,446
Number of Sequences: 1393205
Number of extensions: 18509683
Number of successful extensions: 64862
Number of sequences better than 10.0: 525
Number of HSP's better than 10.0 without gapping: 58032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64093
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40336047648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
