Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005023A_C10 KMC005023A_c10
(1622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B34013 chlorophyll a/b-binding protein 5 - soybean 391 e-130
ref|NP_565787.1| photosystem II type I chlorophyll a /b binding... 373 e-124
gb|AAM64379.1| putative photosystem II type I chlorophyll a b bi... 372 e-124
sp|P13851|CB21_SINAL Chlorophyll A-B binding protein 1, chloropl... 372 e-124
gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassi... 371 e-123
>pir||B34013 chlorophyll a/b-binding protein 5 - soybean
Length = 263
Score = 391 bits (1005), Expect(2) = e-130
Identities = 188/192 (97%), Positives = 191/192 (98%)
Frame = -3
Query: 1362 PCDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 1183
P DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA
Sbjct: 72 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 131
Query: 1182 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGS 1003
GSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+YPGGS
Sbjct: 132 GSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS 191
Query: 1002 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 823
FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNN
Sbjct: 192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
Query: 822 AWAYATNFVPGK 787
AWAYATNFVPGK
Sbjct: 252 AWAYATNFVPGK 263
Score = 97.1 bits (240), Expect(2) = e-130
Identities = 54/71 (76%), Positives = 59/71 (83%), Gaps = 2/71 (2%)
Frame = -1
Query: 1580 MAASTMALSSPSLAGQALNLSPSSQE--VGRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 1407
MAASTMALSS SLAGQA+ L+PS+ + VGR SMRK A+ K VSSGSPWYGPDRVKYLG
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTAS--KTVSSGSPWYGPDRVKYLG 58
Query: 1406 PFSGEPPSYLT 1374
PFSGE P YLT
Sbjct: 59 PFSGE-PIYLT 68
Score = 93.6 bits (231), Expect = 8e-18
Identities = 62/148 (41%), Positives = 76/148 (50%)
Frame = -3
Query: 447 LPLAMSEMLGNAINFGGATRSAPSPSSPATFKTVALFSKKKPAPKQKPVAVAPADEELAK 268
+ L+ S + G AI +PS+P V S +K A K +
Sbjct: 6 MALSSSSLAGQAIKL--------APSTPQL--GVGRVSMRKTASKTVSSG--------SP 47
Query: 267 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 88
WYGPDR +L S P YLTGE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGPF----SGEPIYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 87 MLGAAGFIIPEALNKYGANCGPEAVWFK 4
MLGA G + PE L + G G EAVWFK
Sbjct: 104 MLGALGCVFPELLARNGVKFG-EAVWFK 130
>ref|NP_565787.1| photosystem II type I chlorophyll a /b binding protein; protein id:
At2g34430.1, supported by cDNA: 23727., supported by
cDNA: gi_11908033, supported by cDNA: gi_12642853,
supported by cDNA: gi_13265504 [Arabidopsis thaliana]
gi|2119848|pir||S25677 chlorophyll a/b-binding protein
type I precursor Lhb1B1 - Arabidopsis thaliana
gi|16366|emb|CAA45789.1| photosystem II type I
chlorophyll a /b binding protein [Arabidopsis thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I
chlorophyll a/b binding protein. [Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem
II type I chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|12642854|gb|AAK00369.1|AF339687_1 putative
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana] gi|20197164|gb|AAM14951.1|
putative photosystem II type I chlorophyll a b binding
protein. [Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I
chlorophyll a/b binding protein. [Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I
chlorophyll a/b binding protein. [Arabidopsis thaliana]
Length = 266
Score = 373 bits (958), Expect(2) = e-124
Identities = 182/193 (94%), Positives = 187/193 (96%), Gaps = 1/193 (0%)
Frame = -3
Query: 1362 PCDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 1183
P DYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA
Sbjct: 74 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 133
Query: 1182 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-GPLGEVTDPLYPGG 1006
GSQIFS+GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR+AG GPLGE D LYPGG
Sbjct: 134 GSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGG 193
Query: 1005 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 826
SFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNN
Sbjct: 194 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
Query: 825 NAWAYATNFVPGK 787
NAWA+ATNFVPGK
Sbjct: 254 NAWAFATNFVPGK 266
Score = 97.4 bits (241), Expect(2) = e-124
Identities = 51/72 (70%), Positives = 58/72 (79%), Gaps = 3/72 (4%)
Frame = -1
Query: 1580 MAASTMALSSPSLAGQALNLSPSSQEV---GRFSMRKAATTKKVVSSGSPWYGPDRVKYL 1410
MAASTMALSSP+L G+A+ LSP++ EV GR +MRKA+ K SGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKAS--KPTGPSGSPWYGSDRVKYL 58
Query: 1409 GPFSGEPPSYLT 1374
GPFSGEPPSYLT
Sbjct: 59 GPFSGEPPSYLT 70
Score = 92.8 bits (229), Expect = 1e-17
Identities = 54/125 (43%), Positives = 67/125 (53%)
Frame = -3
Query: 378 SPSSPATFKTVALFSKKKPAPKQKPVAVAPADEELAKWYGPDRRIFLPDGLLDRSEIPEY 199
SP++ F T + +K A P + WYG DR +L E P Y
Sbjct: 21 SPAASEVFGTGRITMRK---------ASKPTGPSGSPWYGSDRVKYLGPF---SGEPPSY 68
Query: 198 LTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPE 19
LTGE PGDYG+D GL PE FA+ + E+IH+RWAMLGA G + PE L + G G E
Sbjct: 69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-E 127
Query: 18 AVWFK 4
AVWFK
Sbjct: 128 AVWFK 132
>gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein.
[Arabidopsis thaliana]
Length = 266
Score = 372 bits (954), Expect(2) = e-124
Identities = 181/193 (93%), Positives = 187/193 (96%), Gaps = 1/193 (0%)
Frame = -3
Query: 1362 PCDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 1183
P DYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELLARNGV+FGEAVWFKA
Sbjct: 74 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVEFGEAVWFKA 133
Query: 1182 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-GPLGEVTDPLYPGG 1006
GSQIFS+GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR+AG GPLGE D LYPGG
Sbjct: 134 GSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGG 193
Query: 1005 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 826
SFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNN
Sbjct: 194 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
Query: 825 NAWAYATNFVPGK 787
NAWA+ATNFVPGK
Sbjct: 254 NAWAFATNFVPGK 266
Score = 97.4 bits (241), Expect(2) = e-124
Identities = 51/72 (70%), Positives = 58/72 (79%), Gaps = 3/72 (4%)
Frame = -1
Query: 1580 MAASTMALSSPSLAGQALNLSPSSQEV---GRFSMRKAATTKKVVSSGSPWYGPDRVKYL 1410
MAASTMALSSP+L G+A+ LSP++ EV GR +MRKA+ K SGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKAS--KPTGPSGSPWYGSDRVKYL 58
Query: 1409 GPFSGEPPSYLT 1374
GPFSGEPPSYLT
Sbjct: 59 GPFSGEPPSYLT 70
Score = 92.8 bits (229), Expect = 1e-17
Identities = 54/125 (43%), Positives = 67/125 (53%)
Frame = -3
Query: 378 SPSSPATFKTVALFSKKKPAPKQKPVAVAPADEELAKWYGPDRRIFLPDGLLDRSEIPEY 199
SP++ F T + +K A P + WYG DR +L E P Y
Sbjct: 21 SPAASEVFGTGRITMRK---------ASKPTGPSGSPWYGSDRVKYLGPF---SGEPPSY 68
Query: 198 LTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPE 19
LTGE PGDYG+D GL PE FA+ + E+IH+RWAMLGA G + PE L + G G E
Sbjct: 69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVEFG-E 127
Query: 18 AVWFK 4
AVWFK
Sbjct: 128 AVWFK 132
>sp|P13851|CB21_SINAL Chlorophyll A-B binding protein 1, chloroplast precursor (LHCII type
I CAB-1) (LHCP) gi|282896|pir||S22511 chlorophyll
a/b-binding protein precursor - white mustard
gi|21138|emb|CAA34459.1| chlorophyll a/b-binding protein
(AA 1-266) [Sinapis alba] gi|21140|emb|CAA33903.1|
chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 372 bits (954), Expect(2) = e-124
Identities = 181/193 (93%), Positives = 186/193 (95%), Gaps = 1/193 (0%)
Frame = -3
Query: 1362 PCDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 1183
P DYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKA
Sbjct: 74 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 133
Query: 1182 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-GPLGEVTDPLYPGG 1006
GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR+AG GPLGE D LYPGG
Sbjct: 134 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGG 193
Query: 1005 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 826
SFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNN
Sbjct: 194 SFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
Query: 825 NAWAYATNFVPGK 787
NAWA+ATNFVPGK
Sbjct: 254 NAWAFATNFVPGK 266
Score = 96.7 bits (239), Expect(2) = e-124
Identities = 51/72 (70%), Positives = 56/72 (76%), Gaps = 3/72 (4%)
Frame = -1
Query: 1580 MAASTMALSSPSLAGQALNLSPSSQEV---GRFSMRKAATTKKVVSSGSPWYGPDRVKYL 1410
MAASTMALSSP+ AG+A+ LSP + EV GR +MRK T K SGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRK--TVKPTGPSGSPWYGSDRVKYL 58
Query: 1409 GPFSGEPPSYLT 1374
GPFSGEPPSYLT
Sbjct: 59 GPFSGEPPSYLT 70
Score = 92.4 bits (228), Expect = 2e-17
Identities = 49/98 (50%), Positives = 57/98 (58%)
Frame = -3
Query: 297 VAPADEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQ 118
V P + WYG DR +L E P YLTGE PGDYG+D GL PE FA+ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 117 AFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFK 4
E+IH RWAMLGA G + PE L + G G EAVWFK
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 132
>gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 371 bits (953), Expect(2) = e-123
Identities = 181/193 (93%), Positives = 186/193 (95%), Gaps = 1/193 (0%)
Frame = -3
Query: 1362 PCDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 1183
P DYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKA
Sbjct: 74 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 133
Query: 1182 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-GPLGEVTDPLYPGG 1006
GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR+AG GPLGE D LYPGG
Sbjct: 134 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGG 193
Query: 1005 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 826
SFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNN
Sbjct: 194 SFDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
Query: 825 NAWAYATNFVPGK 787
NAWA+ATNFVPGK
Sbjct: 254 NAWAFATNFVPGK 266
Score = 96.7 bits (239), Expect(2) = e-123
Identities = 51/72 (70%), Positives = 56/72 (76%), Gaps = 3/72 (4%)
Frame = -1
Query: 1580 MAASTMALSSPSLAGQALNLSPSSQEV---GRFSMRKAATTKKVVSSGSPWYGPDRVKYL 1410
MAASTMALSSP+ AG+A+ LSP + EV GR +MRK T K SGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRK--TVKPTGPSGSPWYGSDRVKYL 58
Query: 1409 GPFSGEPPSYLT 1374
GPFSGEPPSYLT
Sbjct: 59 GPFSGEPPSYLT 70
Score = 92.4 bits (228), Expect = 2e-17
Identities = 49/98 (50%), Positives = 57/98 (58%)
Frame = -3
Query: 297 VAPADEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQ 118
V P + WYG DR +L E P YLTGE PGDYG+D GL PE FA+ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 117 AFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFK 4
E+IH RWAMLGA G + PE L + G G EAVWFK
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,666,135,378
Number of Sequences: 1393205
Number of extensions: 44476352
Number of successful extensions: 176874
Number of sequences better than 10.0: 446
Number of HSP's better than 10.0 without gapping: 122110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156600
length of database: 448,689,247
effective HSP length: 128
effective length of database: 270,359,007
effective search space used: 111387910884
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
