Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005020A_C02 KMC005020A_c02
(1020 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084822.1| ATP-dependent Clp protease proteolytic subunit ... 162 1e-38
ref|NP_054959.1| ATP-dependent Clp protease proteolytic subunit ... 152 1e-35
ref|NP_054525.1| ATP-dependent Clp protease proteolytic subunit ... 150 3e-35
ref|NP_783256.1| ATP-dependent protease; catalytic subunit [Atro... 149 5e-35
ref|NP_054384.1| ATP-dependent Clp protease proteolytic subunit ... 146 6e-34
>ref|NP_084822.1| ATP-dependent Clp protease proteolytic subunit [Lotus japonicus]
gi|18202721|sp|Q9BBQ9|CLPP_LOTJA ATP-dependent Clp
protease proteolytic subunit (Endopeptidase Clp)
gi|13359004|dbj|BAB33221.1| ATP-dependent protease
subunit [Lotus japonicus]
Length = 196
Score = 162 bits (409), Expect = 1e-38
Identities = 79/80 (98%), Positives = 80/80 (99%)
Frame = -2
Query: 1019 EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS 840
EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS
Sbjct: 42 EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS 101
Query: 839 MGSFVLAGGKITQRLAFPHA 780
MGSFVLAGGKIT+RLAFPHA
Sbjct: 102 MGSFVLAGGKITKRLAFPHA 121
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/55 (56%), Positives = 34/55 (61%)
Frame = -1
Query: 168 GRYRKPLLCYIIRVMIHQPASSFYEAQTGEFISGSGRTPETTRNYHRVYVQRTAK 4
G+ K L RVMIHQPASSFYEAQTGEFI + + RVYVQRT K
Sbjct: 110 GKITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGK 164
>ref|NP_054959.1| ATP-dependent Clp protease proteolytic subunit [Spinacia oleracea]
gi|18203258|sp|Q9M3K5|CLPP_SPIOL ATP-dependent Clp
protease proteolytic subunit (Endopeptidase Clp)
gi|7636132|emb|CAB88752.1| ATP-dependent protease
proteolytic subunit [Spinacia oleracea]
Length = 196
Score = 152 bits (383), Expect = 1e-35
Identities = 71/80 (88%), Positives = 77/80 (95%)
Frame = -2
Query: 1019 EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS 840
EISNQLIGLMVYLSIEDD KDLYLFINSPGGWVIPG+AIYDTMQFV+PDV T+CMGLAAS
Sbjct: 42 EISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAAS 101
Query: 839 MGSFVLAGGKITQRLAFPHA 780
MGSF+L GG+IT+RLAFPHA
Sbjct: 102 MGSFILVGGEITKRLAFPHA 121
Score = 50.4 bits (119), Expect = 4e-05
Identities = 28/55 (50%), Positives = 32/55 (57%)
Frame = -1
Query: 168 GRYRKPLLCYIIRVMIHQPASSFYEAQTGEFISGSGRTPETTRNYHRVYVQRTAK 4
G K L RVMIHQPASSFYEAQTGEF+ + + +VY QRT K
Sbjct: 110 GEITKRLAFPHARVMIHQPASSFYEAQTGEFLLEAEELLKLRETLTKVYGQRTGK 164
>ref|NP_054525.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana tabacum]
gi|116527|sp|P12210|CLPP_TOBAC ATP-dependent Clp protease
proteolytic subunit (Endopeptidase Clp)
gi|1143166|gb|AAA84867.1| ClpP protease [Nicotiana
tabacum] gi|2924270|emb|CAA77422.1| ATP-dependent
protease proteolytic subuni [Nicotiana tabacum]
Length = 196
Score = 150 bits (379), Expect = 3e-35
Identities = 70/80 (87%), Positives = 77/80 (95%)
Frame = -2
Query: 1019 EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS 840
EISNQLIGLMVYLSIED+ KDLYLFINSPGGWVIPG+AIYDTMQFV+PDV T+CMGLAAS
Sbjct: 42 EISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAAS 101
Query: 839 MGSFVLAGGKITQRLAFPHA 780
MGSF+L GG+IT+RLAFPHA
Sbjct: 102 MGSFILVGGEITKRLAFPHA 121
Score = 54.7 bits (130), Expect = 2e-06
Identities = 30/55 (54%), Positives = 33/55 (59%)
Frame = -1
Query: 168 GRYRKPLLCYIIRVMIHQPASSFYEAQTGEFISGSGRTPETTRNYHRVYVQRTAK 4
G K L RVMIHQPASSFYEAQTGEF+ + + RVYVQRT K
Sbjct: 110 GEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGK 164
>ref|NP_783256.1| ATP-dependent protease; catalytic subunit [Atropa belladonna]
gi|20068356|emb|CAC88069.1| ATP-dependent protease;
catalytic subunit [Atropa belladonna]
Length = 196
Score = 149 bits (377), Expect = 5e-35
Identities = 71/80 (88%), Positives = 77/80 (95%)
Frame = -2
Query: 1019 EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS 840
EISNQLIGLMVYLSIED+ K+LYLFINSPGGWVIPGIAIYDTMQFV+PDV TVCMGLAAS
Sbjct: 42 EISNQLIGLMVYLSIEDETKELYLFINSPGGWVIPGIAIYDTMQFVRPDVHTVCMGLAAS 101
Query: 839 MGSFVLAGGKITQRLAFPHA 780
MGSF+L GG+IT+RLAFPHA
Sbjct: 102 MGSFILVGGEITKRLAFPHA 121
Score = 50.8 bits (120), Expect = 3e-05
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = -1
Query: 168 GRYRKPLLCYIIRVMIHQPASSFYEAQTGEFISGSGRTPETTRNYHRVYVQRTAK 4
G K L RVM+HQPAS +YEAQTGEF+ + + RVYVQRT K
Sbjct: 110 GEITKRLAFPHARVMMHQPASGYYEAQTGEFVLEAEELLKLRETLTRVYVQRTGK 164
>ref|NP_054384.1| ATP-dependent Clp protease proteolytic subunit [Epifagus virginiana]
gi|231812|sp|P30063|CLPP_EPIVI ATP-dependent Clp protease
proteolytic subunit (Endopeptidase Clp)
gi|7435699|pir||S78388 endopeptidase Clp (EC 3.4.21.92)
chain P [similarity] - beechdrops plastid
gi|336919|gb|AAA65858.1| protease [Epifagus virginiana]
Length = 196
Score = 146 bits (368), Expect = 6e-34
Identities = 67/80 (83%), Positives = 77/80 (95%)
Frame = -2
Query: 1019 EISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAAS 840
+ISNQLIGLMVYLSIEDD K++YLFINSPGGWVIPG+AIYDTMQFV+P+V T+CMGLAAS
Sbjct: 42 DISNQLIGLMVYLSIEDDTKEIYLFINSPGGWVIPGVAIYDTMQFVRPEVHTICMGLAAS 101
Query: 839 MGSFVLAGGKITQRLAFPHA 780
MGSF+L GG+IT+RLAFPHA
Sbjct: 102 MGSFLLVGGEITKRLAFPHA 121
Score = 48.5 bits (114), Expect = 2e-04
Identities = 28/55 (50%), Positives = 31/55 (55%)
Frame = -1
Query: 168 GRYRKPLLCYIIRVMIHQPASSFYEAQTGEFISGSGRTPETTRNYHRVYVQRTAK 4
G K L RVMIHQPAS F+ AQTGEFI + + RVYVQRT K
Sbjct: 110 GEITKRLAFPHARVMIHQPASYFFGAQTGEFILEAEELLKLRETLTRVYVQRTGK 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 909,607,524
Number of Sequences: 1393205
Number of extensions: 21662175
Number of successful extensions: 50170
Number of sequences better than 10.0: 307
Number of HSP's better than 10.0 without gapping: 47131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50043
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59325342805
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
