Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005018A_C02 KMC005018A_c02
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00090591.1| hypothetical protein [Azotobacter vinelandii] 33 2.8
ref|ZP_00083651.1| hypothetical protein [Pseudomonas fluorescens... 32 3.7
ref|ZP_00128182.1| hypothetical protein [Pseudomonas syringae pv... 32 3.7
ref|NP_745872.1| penicillin-binding protein 2 [Pseudomonas putid... 32 4.8
ref|NP_790793.1| phosphoenolpyruvate-protein phosphotransferase,... 32 4.8
>ref|ZP_00090591.1| hypothetical protein [Azotobacter vinelandii]
Length = 640
Score = 32.7 bits (73), Expect = 2.8
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = -2
Query: 253 IAAATRYSVAGICFTAIVMPLHSGHRDNRDRGRERH 146
+ A RY +AG TA V+ + G R NR++ +ERH
Sbjct: 536 VGATARYRIAGKSGTAQVVAIRQGERYNRNKLQERH 571
>ref|ZP_00083651.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 634
Score = 32.3 bits (72), Expect = 3.7
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 256 AIAAATRYSVAGICFTAIVMPLHSGHRDNRDRGRERH 146
A AA +Y +AG TA V+ + G R NR++ ERH
Sbjct: 530 AAAAGAQYRIAGKSGTAQVVAIKQGERYNREKTLERH 566
>ref|ZP_00128182.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 967
Score = 32.3 bits (72), Expect = 3.7
Identities = 26/80 (32%), Positives = 34/80 (42%)
Frame = +1
Query: 295 RGHYKLIPAKIHNNGKVMVLSITPALGCPKQSQWLHCDETARRSGKAQIKPKARNYALPR 474
RG L A +NG VL AL WLH ++T +R G A + P L +
Sbjct: 179 RGARLLRKADCVSNGFAAVLQQVEALSLGDGLWWLHSEQTVKRPGLAFVTPDKPMRYLGQ 238
Query: 475 PLAAHMLT*LFTLFAAHSGI 534
PL L L +L AH +
Sbjct: 239 PLTG--LFCLASLGEAHQAL 256
>ref|NP_745872.1| penicillin-binding protein 2 [Pseudomonas putida KT2440]
gi|24985418|gb|AAN69336.1|AE016571_2 penicillin-binding
protein 2 [Pseudomonas putida KT2440]
Length = 631
Score = 32.0 bits (71), Expect = 4.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 256 AIAAATRYSVAGICFTAIVMPLHSGHRDNRDRGRERH 146
A AA +Y +AG TA V+ + G R NR++ ERH
Sbjct: 527 AAAAGAQYRIAGKSGTAQVVAIKQGERYNRNKTLERH 563
>ref|NP_790793.1| phosphoenolpyruvate-protein phosphotransferase,EI/HPr/EIIA
components [Pseudomonas syringae pv. tomato str. DC3000]
gi|28851411|gb|AAO54488.1| phosphoenolpyruvate-protein
phosphotransferase,EI/HPr/EIIA components [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 955
Score = 32.0 bits (71), Expect = 4.8
Identities = 26/80 (32%), Positives = 34/80 (42%)
Frame = +1
Query: 295 RGHYKLIPAKIHNNGKVMVLSITPALGCPKQSQWLHCDETARRSGKAQIKPKARNYALPR 474
RG L A +NG VL AL WLH ++T +R G A + P L +
Sbjct: 168 RGARLLRKADCVSNGFAAVLQQVEALSLGDGLWWLHSEQTVKRPGLAFVTPDKPIRYLGQ 227
Query: 475 PLAAHMLT*LFTLFAAHSGI 534
PL L L +L AH +
Sbjct: 228 PLTG--LFCLASLGEAHQAL 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,448,576
Number of Sequences: 1393205
Number of extensions: 10220480
Number of successful extensions: 18639
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18625
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
