Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005015A_C01 KMC005015A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189149.1| unknown protein; protein id: At3g25130.1 [Arabi... 77 2e-13
dbj|BAB02071.1| gene_id:MJL12.7~unknown protein [Arabidopsis tha... 77 2e-13
gb|EAA32597.1| hypothetical protein [Neurospora crassa] 36 0.35
gb|EAA27921.1| hypothetical protein ( hypothetical protein B24H1... 35 0.46
ref|NP_671840.1| similar to retinitis pigmentosa GTPase; protein... 35 0.60
>ref|NP_189149.1| unknown protein; protein id: At3g25130.1 [Arabidopsis thaliana]
Length = 425
Score = 76.6 bits (187), Expect = 2e-13
Identities = 47/100 (47%), Positives = 58/100 (58%), Gaps = 17/100 (17%)
Frame = -1
Query: 549 RHNPS--EGMDMLWETYEAESYQGNTN---------------KGKKGEVESTEEEEDEEE 421
RHN +GMD LWETYE ++ + K K E E EEED++
Sbjct: 315 RHNADVGQGMDQLWETYETQTEKKQQTEEEKKKLKKKTKSMMKTKSIEKEVIVEEEDDDG 374
Query: 420 EMEGKLCCLQALKFSTGKMNLGMGRPSHLLHLSRHFKGIG 301
+LCCLQALKFSTGKM+LG+ RP +LL LS+ FKGIG
Sbjct: 375 IDHQQLCCLQALKFSTGKMHLGIARP-NLLKLSKAFKGIG 413
>dbj|BAB02071.1| gene_id:MJL12.7~unknown protein [Arabidopsis thaliana]
Length = 406
Score = 76.6 bits (187), Expect = 2e-13
Identities = 47/100 (47%), Positives = 58/100 (58%), Gaps = 17/100 (17%)
Frame = -1
Query: 549 RHNPS--EGMDMLWETYEAESYQGNTN---------------KGKKGEVESTEEEEDEEE 421
RHN +GMD LWETYE ++ + K K E E EEED++
Sbjct: 296 RHNADVGQGMDQLWETYETQTEKKQQTEEEKKKLKKKTKSMMKTKSIEKEVIVEEEDDDG 355
Query: 420 EMEGKLCCLQALKFSTGKMNLGMGRPSHLLHLSRHFKGIG 301
+LCCLQALKFSTGKM+LG+ RP +LL LS+ FKGIG
Sbjct: 356 IDHQQLCCLQALKFSTGKMHLGIARP-NLLKLSKAFKGIG 394
>gb|EAA32597.1| hypothetical protein [Neurospora crassa]
Length = 1200
Score = 35.8 bits (81), Expect = 0.35
Identities = 23/75 (30%), Positives = 37/75 (48%), Gaps = 10/75 (13%)
Frame = -1
Query: 537 SEGMDMLWETYEAESYQGNTNKGKKGEV----------ESTEEEEDEEEEMEGKLCCLQA 388
+EG + L E E E ++ K+ + E EEEE+EEEE++ ++ +
Sbjct: 396 TEGQEDLTEKEEVEEHKHVATAAKQEDAKLAQEEDEEDEEEEEEEEEEEEVDPEIRRREE 455
Query: 387 LKFSTGKMNLGMGRP 343
L+ KM+ GMG P
Sbjct: 456 LRARMAKMSGGMGLP 470
>gb|EAA27921.1| hypothetical protein ( hypothetical protein B24H17.160 [imported] -
Neurospora crassa )
Length = 160
Score = 35.4 bits (80), Expect = 0.46
Identities = 18/41 (43%), Positives = 22/41 (52%), Gaps = 4/41 (9%)
Frame = -1
Query: 522 MLWET----YEAESYQGNTNKGKKGEVESTEEEEDEEEEME 412
M W T Y ++ G K K+ E E EEEE+EEEE E
Sbjct: 22 MAWSTRYLRYSTQNVDGQKEKSKEEEEEEEEEEEEEEEEEE 62
>ref|NP_671840.1| similar to retinitis pigmentosa GTPase; protein id: At2g12875.1
[Arabidopsis thaliana]
Length = 325
Score = 35.0 bits (79), Expect = 0.60
Identities = 16/31 (51%), Positives = 20/31 (63%)
Frame = -1
Query: 504 EAESYQGNTNKGKKGEVESTEEEEDEEEEME 412
E +SY+ K +K E E +EEEE EEEE E
Sbjct: 197 EEKSYKNEEEKSEKDEEEKSEEEESEEEEKE 227
Score = 31.2 bits (69), Expect = 8.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 513 ETYEAESYQGNTNKGKKGEVESTEEEEDEEEEME 412
++Y+ E + ++ +K E E +EEEE EEEE E
Sbjct: 199 KSYKNEEEKSEKDEEEKSEEEESEEEEKEEEEKE 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,803,924
Number of Sequences: 1393205
Number of extensions: 11557481
Number of successful extensions: 89505
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 45559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71164
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
