Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005013A_C01 KMC005013A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62971.1| putative xyloglucan endotransglycosylase [Arabido... 241 4e-63
ref|NP_192230.1| xyloglucan endotransglycosylase, putative; prot... 241 4e-63
pir||T10523 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) 1 ... 183 1e-45
gb|AAC06021.1| xyloglucan endotransglycosylase precursor [Actini... 181 5e-45
gb|AAN87142.1| xyloglucan endotransglycosylase precursor [Populu... 181 8e-45
>gb|AAM62971.1| putative xyloglucan endotransglycosylase [Arabidopsis thaliana]
Length = 287
Score = 241 bits (616), Expect = 4e-63
Identities = 111/155 (71%), Positives = 138/155 (88%), Gaps = 3/155 (1%)
Frame = +1
Query: 130 LVLMVVVAVAES---AKFDELFQPNWAFDHFIYEGDLLKLKLDNSSGAGFGSKNKYMFGK 300
+++++VV+ E+ AKFDEL++ +WA DH + EG++ KLKLDN SGAGF S++KY+FGK
Sbjct: 9 MIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGK 68
Query: 301 VSIQLKLVQGDSAGTVTAFYMSSEGVNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQ 480
VSIQ+KLV+GDSAGTVTAFYMSS+G NHNEFDFEFLGNTTGEPY VQTN+YVNGVGNREQ
Sbjct: 69 VSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQ 128
Query: 481 RLDLWYDPTKDFHTYTIFWNQRQVVFLVDETPIRV 585
RL+LW+DPT +FHTY+I W++R VVF+VDETPIRV
Sbjct: 129 RLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRV 163
>ref|NP_192230.1| xyloglucan endotransglycosylase, putative; protein id: At4g03210.1,
supported by cDNA: 17748., supported by cDNA:
gi_14994278, supported by cDNA: gi_18252836 [Arabidopsis
thaliana] gi|25313540|pir||G85040 probable xyloglucan
endotransglycosylase [imported] - Arabidopsis thaliana
gi|4262149|gb|AAD14449.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|7270191|emb|CAB77806.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|14994279|gb|AAK73274.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|18252837|gb|AAL62345.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|25084277|gb|AAN72210.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
Length = 290
Score = 241 bits (616), Expect = 4e-63
Identities = 111/155 (71%), Positives = 138/155 (88%), Gaps = 3/155 (1%)
Frame = +1
Query: 130 LVLMVVVAVAES---AKFDELFQPNWAFDHFIYEGDLLKLKLDNSSGAGFGSKNKYMFGK 300
+++++VV+ E+ AKFDEL++ +WA DH + EG++ KLKLDN SGAGF S++KY+FGK
Sbjct: 12 MIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGK 71
Query: 301 VSIQLKLVQGDSAGTVTAFYMSSEGVNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQ 480
VSIQ+KLV+GDSAGTVTAFYMSS+G NHNEFDFEFLGNTTGEPY VQTN+YVNGVGNREQ
Sbjct: 72 VSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQ 131
Query: 481 RLDLWYDPTKDFHTYTIFWNQRQVVFLVDETPIRV 585
RL+LW+DPT +FHTY+I W++R VVF+VDETPIRV
Sbjct: 132 RLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRV 166
>pir||T10523 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) 1 - common
nasturtium gi|1008904|gb|AAB39950.1| xyloglucan
endotransglycosylase
Length = 293
Score = 183 bits (465), Expect = 1e-45
Identities = 87/163 (53%), Positives = 114/163 (69%), Gaps = 8/163 (4%)
Frame = +1
Query: 121 FLGLVLMVVVAVAESAK------FDELFQPNWAFDHFIY--EGDLLKLKLDNSSGAGFGS 276
FLG+++M A+ + K F + P WAFDH Y G ++L LD +G GF S
Sbjct: 9 FLGILVMATGAMGAAPKRPVAVPFGRNYAPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQS 68
Query: 277 KNKYMFGKVSIQLKLVQGDSAGTVTAFYMSSEGVNHNEFDFEFLGNTTGEPYSVQTNVYV 456
K Y+FG S+Q+KLV GDSAGTVTAFY+SS+ H+E DFEFLGN TG+PY +QTNV+
Sbjct: 69 KGSYLFGHFSMQIKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNKTGQPYILQTNVFT 128
Query: 457 NGVGNREQRLDLWYDPTKDFHTYTIFWNQRQVVFLVDETPIRV 585
G G+REQR+ LW+DPTKD+H+Y++ WN Q+VF VD+ PIRV
Sbjct: 129 GGKGDREQRIYLWFDPTKDYHSYSVLWNLYQIVFFVDDVPIRV 171
>gb|AAC06021.1| xyloglucan endotransglycosylase precursor [Actinidia deliciosa]
Length = 263
Score = 181 bits (460), Expect = 5e-45
Identities = 86/162 (53%), Positives = 112/162 (69%), Gaps = 8/162 (4%)
Frame = +1
Query: 124 LGLVLMVVVAVAESAK------FDELFQPNWAFDHFIY--EGDLLKLKLDNSSGAGFGSK 279
LGL LMV +A + + F + P WAFDH Y G ++L LD +G GF SK
Sbjct: 3 LGLFLMVSATMATAPRKPVDVPFGRNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSK 62
Query: 280 NKYMFGKVSIQLKLVQGDSAGTVTAFYMSSEGVNHNEFDFEFLGNTTGEPYSVQTNVYVN 459
Y+FG S+Q+K+V GDSAGTVTAFY+SS+ H+E DFEFLGN TG+PY +QTNV+
Sbjct: 63 GSYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTG 122
Query: 460 GVGNREQRLDLWYDPTKDFHTYTIFWNQRQVVFLVDETPIRV 585
G G+REQR+ LW+DPTKD+H Y++ WN Q+VF VD+ PIR+
Sbjct: 123 GKGDREQRIYLWFDPTKDYHAYSVLWNLYQIVFFVDDVPIRI 164
>gb|AAN87142.1| xyloglucan endotransglycosylase precursor [Populus tremula x
Populus tremuloides]
Length = 294
Score = 181 bits (458), Expect = 8e-45
Identities = 86/163 (52%), Positives = 114/163 (69%), Gaps = 8/163 (4%)
Frame = +1
Query: 121 FLGLVLMVVVAVAESAK------FDELFQPNWAFDHFIY--EGDLLKLKLDNSSGAGFGS 276
FLG+++MV + + + F + P WAFDH Y G+ ++L LD +G GF S
Sbjct: 10 FLGMLVMVSGTMGAALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQS 69
Query: 277 KNKYMFGKVSIQLKLVQGDSAGTVTAFYMSSEGVNHNEFDFEFLGNTTGEPYSVQTNVYV 456
K Y+FG S+Q+KLV GDSAGTVTAFY+SS+ H+E DFEFLGN TG+PY +QTNV+
Sbjct: 70 KGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFT 129
Query: 457 NGVGNREQRLDLWYDPTKDFHTYTIFWNQRQVVFLVDETPIRV 585
G G+REQR+ LW+DPTK+FH Y++ WN +VFLVD+ PIRV
Sbjct: 130 GGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRV 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,932,158
Number of Sequences: 1393205
Number of extensions: 13447181
Number of successful extensions: 58630
Number of sequences better than 10.0: 241
Number of HSP's better than 10.0 without gapping: 46635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55365
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
