Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005011A_C01 KMC005011A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF87030.1|AC006535_8 T24P13.13 [Arabidopsis thaliana] gi|182... 58 1e-07
gb|AAM63799.1| unknown [Arabidopsis thaliana] 58 1e-07
ref|NP_564260.1| expressed protein; protein id: At1g26750.1, sup... 58 1e-07
ref|NP_652040.2| CG5824-PA [Drosophila melanogaster] gi|21429048... 35 1.0
ref|NP_733329.1| CG31036-PA [Drosophila melanogaster] gi|2317262... 34 1.8
>gb|AAF87030.1|AC006535_8 T24P13.13 [Arabidopsis thaliana] gi|18252979|gb|AAL62416.1| unknown
protein [Arabidopsis thaliana]
gi|21389657|gb|AAM48027.1| unknown protein [Arabidopsis
thaliana]
Length = 93
Score = 57.8 bits (138), Expect = 1e-07
Identities = 27/68 (39%), Positives = 39/68 (56%)
Frame = -2
Query: 621 KQAYKRLKEIAHLQGKRPPPNPYPNPIKEIQAEERKYVRDRFFNPKIHEIVKQKQAEAES 442
K+AYKRLKE+A +Q K PPP PYP+ K + + + +DRF P + +V Q + E +
Sbjct: 16 KKAYKRLKELAVMQDKDPPPKPYPSAKKGLITQSKTSAKDRFQTPSVRRLVNQLKNEKDV 75
Query: 441 FRSGFRGG 418
GG
Sbjct: 76 LLQDRTGG 83
>gb|AAM63799.1| unknown [Arabidopsis thaliana]
Length = 195
Score = 57.8 bits (138), Expect = 1e-07
Identities = 27/68 (39%), Positives = 39/68 (56%)
Frame = -2
Query: 621 KQAYKRLKEIAHLQGKRPPPNPYPNPIKEIQAEERKYVRDRFFNPKIHEIVKQKQAEAES 442
K+AYKRLKE+A +Q K PPP PYP+ K + + + +DRF P + +V Q + E +
Sbjct: 118 KKAYKRLKELAVMQDKDPPPKPYPSAKKGLITQSKTSTKDRFQTPSVRRLVNQLKNEKDV 177
Query: 441 FRSGFRGG 418
GG
Sbjct: 178 LLQDRTGG 185
>ref|NP_564260.1| expressed protein; protein id: At1g26750.1, supported by cDNA:
2725. [Arabidopsis thaliana]
Length = 195
Score = 57.8 bits (138), Expect = 1e-07
Identities = 27/68 (39%), Positives = 39/68 (56%)
Frame = -2
Query: 621 KQAYKRLKEIAHLQGKRPPPNPYPNPIKEIQAEERKYVRDRFFNPKIHEIVKQKQAEAES 442
K+AYKRLKE+A +Q K PPP PYP+ K + + + +DRF P + +V Q + E +
Sbjct: 118 KKAYKRLKELAVMQDKDPPPKPYPSAKKGLITQSKTSAKDRFQTPSVRRLVNQLKNEKDV 177
Query: 441 FRSGFRGG 418
GG
Sbjct: 178 LLQDRTGG 185
>ref|NP_652040.2| CG5824-PA [Drosophila melanogaster] gi|21429048|gb|AAM50243.1|
LD15947p [Drosophila melanogaster]
gi|23171563|gb|AAF55429.2| CG5824-PA [Drosophila
melanogaster]
Length = 852
Score = 34.7 bits (78), Expect = 1.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 582 QGKRPPPNPYPNPIKEIQAEERKYVRDRFFNPKIHEIVKQKQAEAESFRS 433
Q +PPP+ Y +KE+ E R V D+ NP E+ KQ+ A E +
Sbjct: 237 QDAKPPPDAYDKLLKEMIFEPRGSVADKLINP--DELAKQEAARLEKLEN 284
>ref|NP_733329.1| CG31036-PA [Drosophila melanogaster] gi|23172625|gb|AAF56967.2|
CG31036-PA [Drosophila melanogaster]
Length = 1007
Score = 33.9 bits (76), Expect = 1.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -2
Query: 582 QGKRPPPNPYPNPIKEIQAEERKYVRDRFFNPKIHEIVKQKQAEAESFRSGFRG 421
QG +PPP +P + Q++ + RD IH + + +A+ + + + G
Sbjct: 317 QGAQPPPQTHPQSLPHSQSQSQPLYRDEHVRVVIHNLTQISEADVQKWSTNTNG 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,800,955
Number of Sequences: 1393205
Number of extensions: 10503176
Number of successful extensions: 30267
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30191
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
