Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005010A_C01 KMC005010A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173786.1| putative auxin-induced protein; protein id: At1... 251 4e-66
sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g237... 251 4e-66
gb|AAM62737.1| Quinone oxidoreductase-like protein [Arabidopsis ... 250 8e-66
dbj|BAC22575.1| contains EST AU032464(S10552)~quinone oxidoreduc... 241 4e-63
emb|CAA04767.1| ripening-induced protein [Fragaria vesca] 224 8e-58
>ref|NP_173786.1| putative auxin-induced protein; protein id: At1g23740.1, supported
by cDNA: 155143., supported by cDNA: gi_15724192,
supported by cDNA: gi_20334863 [Arabidopsis thaliana]
gi|15724193|gb|AAL06488.1|AF411799_1 At1g23740/F5O8_27
[Arabidopsis thaliana] gi|20334864|gb|AAM16188.1|
At1g23740/F5O8_27 [Arabidopsis thaliana]
Length = 386
Score = 251 bits (642), Expect = 4e-66
Identities = 119/154 (77%), Positives = 142/154 (91%)
Frame = -3
Query: 595 LNGSGGVGSLAIQLAKQVFGAARVAATSSTRNLELLKSLGVDLAIDYTKENFEDLPEKFD 416
LNG+GGVGSL IQLAK V+GA++VAAT+ST LEL++SLG DLAIDYTKEN EDLP+K+D
Sbjct: 233 LNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYD 292
Query: 415 VVYDAIGQCDRAVKAIQEGGSVVALTGAVTPPGFRFVVTSHGTVLRKLNPYLESGKVKPI 236
VV+DAIG CD+AVK I+EGG VVALTGAVTPPGFRFVVTS+G VL+KLNPY+ESGKVKP+
Sbjct: 293 VVFDAIGMCDKAVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPV 352
Query: 235 VDSQGPFPFTQLAEAFSYLETNRATGKVVIHPIP 134
VD +GPFPF+++A+AFSYLETN ATGKVV++PIP
Sbjct: 353 VDPKGPFPFSRVADAFSYLETNHATGKVVVYPIP 386
>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740
gi|25282938|pir||E86371 quinone oxidoreductase-like
protein At1g23740 - Arabidopsis thaliana
gi|4056456|gb|AAC98029.1| Strong similarity to gb|U20808
auxin-induced protein from Vigna radiata and a member of
the zinc-binding dehydrogenase family PF|00107. ESTs
gb|T43674, gb|H77006 and gb|AA395179 come from this
gene. [Arabidopsis thaliana]
Length = 309
Score = 251 bits (642), Expect = 4e-66
Identities = 119/154 (77%), Positives = 142/154 (91%)
Frame = -3
Query: 595 LNGSGGVGSLAIQLAKQVFGAARVAATSSTRNLELLKSLGVDLAIDYTKENFEDLPEKFD 416
LNG+GGVGSL IQLAK V+GA++VAAT+ST LEL++SLG DLAIDYTKEN EDLP+K+D
Sbjct: 156 LNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYD 215
Query: 415 VVYDAIGQCDRAVKAIQEGGSVVALTGAVTPPGFRFVVTSHGTVLRKLNPYLESGKVKPI 236
VV+DAIG CD+AVK I+EGG VVALTGAVTPPGFRFVVTS+G VL+KLNPY+ESGKVKP+
Sbjct: 216 VVFDAIGMCDKAVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPV 275
Query: 235 VDSQGPFPFTQLAEAFSYLETNRATGKVVIHPIP 134
VD +GPFPF+++A+AFSYLETN ATGKVV++PIP
Sbjct: 276 VDPKGPFPFSRVADAFSYLETNHATGKVVVYPIP 309
>gb|AAM62737.1| Quinone oxidoreductase-like protein [Arabidopsis thaliana]
Length = 309
Score = 250 bits (639), Expect = 8e-66
Identities = 119/154 (77%), Positives = 142/154 (91%)
Frame = -3
Query: 595 LNGSGGVGSLAIQLAKQVFGAARVAATSSTRNLELLKSLGVDLAIDYTKENFEDLPEKFD 416
LNG+GGVGSL IQLAK V+GA++VAAT+ST LEL++SLG DLAIDYTKEN EDLP+K+D
Sbjct: 156 LNGAGGVGSLMIQLAKHVYGASKVAATASTGKLELVRSLGADLAIDYTKENIEDLPDKYD 215
Query: 415 VVYDAIGQCDRAVKAIQEGGSVVALTGAVTPPGFRFVVTSHGTVLRKLNPYLESGKVKPI 236
VV+DAIG CD+AVK I+EGG VVALTGAVTPPGFRFVVTS+G VL+KLNPY+ESGKVKP+
Sbjct: 216 VVFDAIGMCDKAVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPV 275
Query: 235 VDSQGPFPFTQLAEAFSYLETNRATGKVVIHPIP 134
VD +GPFPF+++A+AFSYLETN ATGKVV++PIP
Sbjct: 276 VDPKGPFPFSRVADAFSYLETNHATGKVVVYPIP 309
>dbj|BAC22575.1| contains EST AU032464(S10552)~quinone oxidoreductase-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 309
Score = 241 bits (616), Expect = 4e-63
Identities = 119/154 (77%), Positives = 137/154 (88%)
Frame = -3
Query: 595 LNGSGGVGSLAIQLAKQVFGAARVAATSSTRNLELLKSLGVDLAIDYTKENFEDLPEKFD 416
L G+GGVGSLAIQLAK V+GA++VAAT+ST LELLKSLG D+AIDYTKENFEDLP+K+D
Sbjct: 156 LGGAGGVGSLAIQLAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPDKYD 215
Query: 415 VVYDAIGQCDRAVKAIQEGGSVVALTGAVTPPGFRFVVTSHGTVLRKLNPYLESGKVKPI 236
VV DA+GQ ++AVK ++EGGSVV LTGAV PPGFRFVVTS G+VL KLNPYLESGKVKP+
Sbjct: 216 VVLDAVGQGEKAVKVVKEGGSVVVLTGAVVPPGFRFVVTSDGSVLEKLNPYLESGKVKPL 275
Query: 235 VDSQGPFPFTQLAEAFSYLETNRATGKVVIHPIP 134
VD +GPF F+Q+ EAFSYLET RATGKVVI PIP
Sbjct: 276 VDPKGPFAFSQVVEAFSYLETGRATGKVVISPIP 309
>emb|CAA04767.1| ripening-induced protein [Fragaria vesca]
Length = 337
Score = 224 bits (570), Expect = 8e-58
Identities = 105/154 (68%), Positives = 131/154 (84%)
Frame = -3
Query: 595 LNGSGGVGSLAIQLAKQVFGAARVAATSSTRNLELLKSLGVDLAIDYTKENFEDLPEKFD 416
L G+GGVG+ IQLAK VFGA++VAAT+ST+ L+LL++LG DLAIDYTKENFEDLPEKFD
Sbjct: 184 LGGAGGVGTHIIQLAKHVFGASKVAATASTKKLDLLRTLGADLAIDYTKENFEDLPEKFD 243
Query: 415 VVYDAIGQCDRAVKAIQEGGSVVALTGAVTPPGFRFVVTSHGTVLRKLNPYLESGKVKPI 236
VVYDA+G+ D+AVKA++EGG VV + G TPP FV+TS G+VL KL PYLESGKVKP+
Sbjct: 244 VVYDAVGETDKAVKAVKEGGKVVTIVGPATPPAILFVLTSKGSVLEKLKPYLESGKVKPV 303
Query: 235 VDSQGPFPFTQLAEAFSYLETNRATGKVVIHPIP 134
+D P+PFT++ EAF YLE++RATGKVV++PIP
Sbjct: 304 LDPTSPYPFTKVVEAFGYLESSRATGKVVVYPIP 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,509,320
Number of Sequences: 1393205
Number of extensions: 11158241
Number of successful extensions: 29782
Number of sequences better than 10.0: 581
Number of HSP's better than 10.0 without gapping: 28404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29504
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
