Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005008A_C01 KMC005008A_c01
(1124 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD56219.1| ribosomal protein S3a [Cicer arietinum] 483 e-135
sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN) 468 e-131
dbj|BAA89498.1| cyc07 [Daucus carota] 461 e-128
ref|NP_195193.1| Putative S-phase-specific ribosomal protein; pr... 456 e-127
ref|NP_187135.1| putative 40S ribosomal protein S3A (S phase spe... 456 e-127
>emb|CAD56219.1| ribosomal protein S3a [Cicer arietinum]
Length = 261
Score = 483 bits (1242), Expect = e-135
Identities = 239/261 (91%), Positives = 252/261 (95%)
Frame = -1
Query: 1088 MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 909
MAVGKNKRISKGKKG KKKA+DPF+KKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
Query: 908 LKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTL 729
LKHRVFE+SLADLQGDE+ AFRKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKWQTL
Sbjct: 61 LKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120
Query: 728 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 549
IEAHVDVKTTDNYTLRMFCIGFTKRR+NQVKRTCYAQSSQIRQIRRKMREIM NQATSCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
Query: 548 LKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 369
LKELVRKFIPE+IGKE+EKAT+ IYPLQNVF+RKVKILK+PKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVG 240
Query: 368 TKVDRPADETVAEEPTEIVGA 306
TKV+ PADETV E EIVGA
Sbjct: 241 TKVESPADETVVEGTPEIVGA 261
>sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN)
Length = 260
Score = 468 bits (1204), Expect = e-131
Identities = 227/261 (86%), Positives = 251/261 (95%)
Frame = -1
Query: 1088 MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 909
MAVGKNKRISKGKKG KKKA+DPFAKKDWYDIKAPSVF V+NVGKTLV+RTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60
Query: 908 LKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTL 729
L+HRVFE+SLADLQGDE+ +FRKIRLRAED+QGKNVLTNFWGM+FTTDKLRSLVRKWQ+L
Sbjct: 61 LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120
Query: 728 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 549
IEAHVDVKTTD+YTLRMFCIGFTK+RANQ KRTCYAQSSQIRQIRRKMREIM NQA SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCD 180
Query: 548 LKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 369
LK+LV+KFIPE IG+E+EKAT+ IYPLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ED+G
Sbjct: 181 LKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIG 240
Query: 368 TKVDRPADETVAEEPTEIVGA 306
TK+DRPA+E VA EPTE++GA
Sbjct: 241 TKLDRPAEEAVA-EPTEVIGA 260
>dbj|BAA89498.1| cyc07 [Daucus carota]
Length = 261
Score = 461 bits (1185), Expect = e-128
Identities = 227/261 (86%), Positives = 247/261 (93%)
Frame = -1
Query: 1088 MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 909
MAVGKNKRISKGKKG KKKA+DPFAKKDWYDIKAP+VFQ KNVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEG 60
Query: 908 LKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTL 729
LKHRVFEV LADLQGDE+QA+RKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKWQTL
Sbjct: 61 LKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120
Query: 728 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 549
IEAHVDVKTTD+YTLRMFCIGFTK+RANQ KRTCYAQSSQIRQIRRKM EIM NQA+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCD 180
Query: 548 LKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 369
LKELV KFIPE IG+E+EKAT+ I+PLQNVF+RKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 LKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVG 240
Query: 368 TKVDRPADETVAEEPTEIVGA 306
K++RP +ET+ E TE+VGA
Sbjct: 241 VKLERPIEETMVEGETEVVGA 261
>ref|NP_195193.1| Putative S-phase-specific ribosomal protein; protein id: At4g34670.1,
supported by cDNA: gi_17064847 [Arabidopsis thaliana]
gi|19884297|sp|Q42262|RS3A_ARATH 40S ribosomal protein
S3A gi|7441117|pir||T05287 ribosomal protein S3a,
cytosolic - Arabidopsis thaliana
gi|2661422|emb|CAA04689.1| Putative S-phase-specific
ribosomal protein [Arabidopsis thaliana]
gi|3096936|emb|CAA18846.1| Putative S-phase-specific
ribosomal protein [Arabidopsis thaliana]
gi|7270417|emb|CAB80184.1| Putative S-phase-specific
ribosomal protein [Arabidopsis thaliana]
gi|17064848|gb|AAL32578.1| Putative S-phase-specific
ribosomal protein [Arabidopsis thaliana]
Length = 262
Score = 456 bits (1174), Expect = e-127
Identities = 225/262 (85%), Positives = 242/262 (91%), Gaps = 1/262 (0%)
Frame = -1
Query: 1088 MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 909
MAVGKNKRISKG+KG KKKA DPF+KKDWYD+KAP F +NVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEG 60
Query: 908 LKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTL 729
LKHRVFEVSLADLQ DE+ A+RKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KWQTL
Sbjct: 61 LKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL 120
Query: 728 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 549
IEAHVDVKTTD YTLRMFCI FTKRRANQVKRTCYAQSSQIRQIRRKM EIM +A+SCD
Sbjct: 121 IEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCD 180
Query: 548 LKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDY-SEDV 372
LKELV KFIPE IG+E+EKAT GIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDY +EDV
Sbjct: 181 LKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDV 240
Query: 371 GTKVDRPADETVAEEPTEIVGA 306
G KVDRPADET+ EEPTEI+GA
Sbjct: 241 GVKVDRPADETMVEEPTEIIGA 262
>ref|NP_187135.1| putative 40S ribosomal protein S3A (S phase specific); protein id:
At3g04840.1, supported by cDNA: 18185., supported by
cDNA: gi_17065439, supported by cDNA: gi_20148512
[Arabidopsis thaliana]
gi|12322852|gb|AAG51414.1|AC009465_14 putative 40S
ribosomal protein S3A (S phase specific); 75194-73527
[Arabidopsis thaliana] gi|17065440|gb|AAL32874.1|
putative 40S ribosomal protein S3A (S phase specific)
[Arabidopsis thaliana] gi|20148513|gb|AAM10147.1|
putative 40S ribosomal protein S3A (S phase specific)
[Arabidopsis thaliana] gi|21553921|gb|AAM63004.1|
putative 40S ribosomal protein S3A (S phase specific)
[Arabidopsis thaliana]
Length = 262
Score = 456 bits (1174), Expect = e-127
Identities = 223/262 (85%), Positives = 244/262 (93%), Gaps = 1/262 (0%)
Frame = -1
Query: 1088 MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 909
MAVGKNKRISKG+KG KKKA DPF+KKDWYD+KAPS+F +NVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEG 60
Query: 908 LKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTL 729
LKHRVFEVSLADLQGDE+ A+RKIRLRAEDVQG+NVL FWGM+FTTDKLRSLV+KWQTL
Sbjct: 61 LKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTL 120
Query: 728 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 549
IEAHVDVKTTD+YTLR+FCI FTKRRANQVKRTCYAQSSQIRQIRRKMR+IM +A+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCD 180
Query: 548 LKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYS-EDV 372
LK+LV KFIPE IG+E+EKAT GIYPLQNVF+RKVKILKAPKFDLGKLM+VHGDYS EDV
Sbjct: 181 LKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDV 240
Query: 371 GTKVDRPADETVAEEPTEIVGA 306
G KVDRPADE EEPTEI+GA
Sbjct: 241 GVKVDRPADEMAVEEPTEIIGA 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 923,045,191
Number of Sequences: 1393205
Number of extensions: 21032758
Number of successful extensions: 53309
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 50763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53126
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 68360116878
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
