Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005003A_C01 KMC005003A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BBT4|YCF3_LOTJA Photosystem I assembly protein ycf3 87 1e-16
sp|P27324|YCF3_MAIZE Photosystem I assembly protein ycf3 (IRF170) 86 4e-16
gb|AAB30283.2| rps operon [Zea mays] 86 4e-16
ref|NP_054498.1| photosystem I assembly protein Ycf3 [Nicotiana ... 85 5e-16
ref|NP_039384.1| photosystem I assembly protein Ycf3 [Oryza sati... 84 1e-15
>sp|Q9BBT4|YCF3_LOTJA Photosystem I assembly protein ycf3
Length = 168
Score = 87.4 bits (215), Expect = 1e-16
Identities = 42/42 (100%), Positives = 42/42 (100%)
Frame = -3
Query: 195 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 70
MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG
Sbjct: 1 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 42
>sp|P27324|YCF3_MAIZE Photosystem I assembly protein ycf3 (IRF170)
Length = 170
Score = 85.5 bits (210), Expect = 4e-16
Identities = 40/44 (90%), Positives = 42/44 (94%)
Frame = -3
Query: 195 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDGAI 64
MPRSRINGNFIDKTFS+VANILLQIIPTTSGEK AFTYYRDG +
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44
>gb|AAB30283.2| rps operon [Zea mays]
Length = 170
Score = 85.5 bits (210), Expect = 4e-16
Identities = 40/44 (90%), Positives = 42/44 (94%)
Frame = -3
Query: 195 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDGAI 64
MPRSRINGNFIDKTFS+VANILLQIIPTTSGEK AFTYYRDG +
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44
>ref|NP_054498.1| photosystem I assembly protein Ycf3 [Nicotiana tabacum]
gi|140285|sp|P12204|YCF3_TOBAC Photosystem I assembly
protein ycf3 gi|2924263|emb|CAA77415.1| Ycf3 protein
[Nicotiana tabacum]
Length = 168
Score = 85.1 bits (209), Expect = 5e-16
Identities = 39/42 (92%), Positives = 42/42 (99%)
Frame = -3
Query: 195 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 70
MPRSRINGNFIDKTFS+VANILL++IPTTSGEKEAFTYYRDG
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42
>ref|NP_039384.1| photosystem I assembly protein Ycf3 [Oryza sativa (japonica
cultivar-group)] gi|669081|emb|CAA33997.1| ORF170 [Oryza
sativa (japonica cultivar-group)]
Length = 169
Score = 84.0 bits (206), Expect = 1e-15
Identities = 39/44 (88%), Positives = 42/44 (94%)
Frame = -3
Query: 195 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDGAI 64
MPRSRINGNFIDKTFS+VANILL+IIPTTSGEK AFTYYRDG +
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,134,156
Number of Sequences: 1393205
Number of extensions: 9804974
Number of successful extensions: 16305
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 15944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16304
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
