Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005002A_C01 KMC005002A_c01
(416 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00070247.1| hypothetical protein [Oenococcus oeni MCW] 32 1.4
emb|CAD23186.1| RIIB protein [Enterobacteria phage RB49] 30 9.2
ref|XP_051698.1| similar to PRO2822 [Homo sapiens] 30 9.2
>gb|ZP_00070247.1| hypothetical protein [Oenococcus oeni MCW]
Length = 342
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -3
Query: 210 RRIYW*FLSVTSHSLES*FSYSLDIVTQTQPRPNLYLSNYDILPIAFISI*I*IIGWFWL 31
+R++W F ++ +L F YS V + R + +NY L +AF+ I + W+
Sbjct: 5 QRVFWMFFTLFIGALA--FIYSFHKVNIREFREQISQTNYGWLLVAFVLIIFYYLSMAWI 62
Query: 30 KVVILEP 10
++LEP
Sbjct: 63 LKILLEP 69
>emb|CAD23186.1| RIIB protein [Enterobacteria phage RB49]
Length = 99
Score = 29.6 bits (65), Expect = 9.2
Identities = 14/45 (31%), Positives = 18/45 (39%)
Frame = -3
Query: 363 FLAHVSENQPGRAAKMKEAIINVD*SQASTTDLPDSEMLCQEGRH 229
F H +N PGR KMK ++ PD + C G H
Sbjct: 18 FFTHTFDNSPGRTVKMKRKDVD-----------PDDDRTCSNGLH 51
>ref|XP_051698.1| similar to PRO2822 [Homo sapiens]
Length = 100
Score = 29.6 bits (65), Expect = 9.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 239 RDATILASVHAEFTGSFCLSPLIPWNH 159
RD + L ++ + FT FCLSPL W++
Sbjct: 38 RDLSSLQALPSRFTPFFCLSPLSSWDY 64
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,212,718
Number of Sequences: 1393205
Number of extensions: 6587818
Number of successful extensions: 21216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21216
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
