KMC005001A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005001A_C01 KMC005001A_c01
AAATCGAAATGAAAGATATGTTTATTTAGCTAGGAGATATAAGCATAAATATGTAGATGA
ATACATTGACATCAAATCTGAAACAACTTTTTCTAGCTTAGCTCATGAGATCATGAGATT
AAAGCTCATCTTTAGGAGATGAACGTGGTTTTGGATTCTCAGAGGAGTTTGGGATGGGGT
AGGAAGCCTCCATAGCTATGCCACATAGCCCCTCCTTGTCAGATATGTTCCTCTGCATTC
TGATATAACCCTGTTCTCCCCATTCTGGCCCCCAAGAGTTCTTCACTATCCAGTAGTCAG
TTCCATCAACAGTTGTTCCATATCCCACAACCGCTACACCATGATCAAGCCCCGTGCCAC
AATCGCCAGTAAATACCCCCTCTGAGTAGAATGGGAAATCAGATCCACCAGCATCTATAG
CTACAGATACAGGTGGGTTGGCAACAGCATTGAGCAACGCGGCTTCGTCGTTAGCAGGAA
CAGTCTCATGGCCATCAATTGA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005001A_C01 KMC005001A_c01
         (502 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P12412|CYSP_VIGMU Vignain precursor (Bean endopeptidase) (Cys...   223  9e-58
prf||1910332A Cys endopeptidase                                       223  9e-58
pir||T08122 cysteine endopeptidase (EC 3.4.22.-) precursor - cas...   221  4e-57
gb|AAA92063.1| cysteinyl endopeptidase [Vigna radiata]                221  5e-57
pir||S22502 cysteine proteinase (EC 3.4.22.-) - kidney bean           220  6e-57

>sp|P12412|CYSP_VIGMU Vignain precursor (Bean endopeptidase) (Cysteine proteinase)
           (Sulfhydryl-endopeptidase) (SH-EP) gi|82006|pir||S12581
           cysteine proteinase (EC 3.4.22.-) precursor - black gram
           gi|22062|emb|CAA33753.1| sulfhydryl-pre-endopeptidase
           (AA -20 to 342) [Vigna mungo] gi|22066|emb|CAA36181.1|
           sulfhydryl-endopeptidase [Vigna mungo]
          Length = 362

 Score =  223 bits (568), Expect = 9e-58
 Identities = 108/128 (84%), Positives = 113/128 (87%), Gaps = 1/128 (0%)
 Frame = -1

Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
           SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVG 294

Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPK-P 146
           YGTTVDGT+YWIV+NSWGPEWGEQGYIRMQRNIS KEGLCGIAM ASYPI NSS+NP   
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGS 354

Query: 145 RSSPKDEL 122
            SSPKDEL
Sbjct: 355 LSSPKDEL 362

>prf||1910332A Cys endopeptidase
          Length = 362

 Score =  223 bits (568), Expect = 9e-58
 Identities = 108/128 (84%), Positives = 113/128 (87%), Gaps = 1/128 (0%)
 Frame = -1

Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
           SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVG 294

Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPK-P 146
           YGTTVDGT+YWIV+NSWGPEWGEQGYIRMQRNIS KEGLCGIAM ASYPI NSS+NP   
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGS 354

Query: 145 RSSPKDEL 122
            SSPKDEL
Sbjct: 355 LSSPKDEL 362

>pir||T08122 cysteine endopeptidase (EC 3.4.22.-) precursor - castor bean
           gi|2944446|gb|AAC62396.1| cysteine endopeptidase
           precursor [Ricinus communis]
          Length = 360

 Score =  221 bits (563), Expect = 4e-57
 Identities = 106/128 (82%), Positives = 111/128 (85%), Gaps = 1/128 (0%)
 Frame = -1

Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
           SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTG CGT LDHGVA+VG
Sbjct: 233 SIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVG 292

Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPKP- 146
           YGTT+DGT YW VKNSWGPEWGE+GYIRM+R ISDKEGLCGIAMEASYPI  SS NP   
Sbjct: 293 YGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNNPSGI 352

Query: 145 RSSPKDEL 122
           +SSPKDEL
Sbjct: 353 KSSPKDEL 360

>gb|AAA92063.1| cysteinyl endopeptidase [Vigna radiata]
          Length = 362

 Score =  221 bits (562), Expect = 5e-57
 Identities = 107/128 (83%), Positives = 112/128 (86%), Gaps = 1/128 (0%)
 Frame = -1

Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
           SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGV TGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVLTGDCNTDLNHGVAIVG 294

Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPKPR 143
           YGTTVDGT+YWIV+NSWGPEWGEQGYIRMQRNIS KEGLCGIAM ASYPI NSS+NP   
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGS 354

Query: 142 -SSPKDEL 122
            SSPKDEL
Sbjct: 355 FSSPKDEL 362

>pir||S22502 cysteine proteinase (EC 3.4.22.-) - kidney bean
          Length = 362

 Score =  220 bits (561), Expect = 6e-57
 Identities = 107/128 (83%), Positives = 112/128 (86%), Gaps = 1/128 (0%)
 Frame = -1

Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
           SIDGHE VPANDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTDLNHGVAIVG 294

Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPKPR 143
           YGTTVDGT+YWIV+NSWGPEWGE GYIRMQRNIS KEGLCGIAM  SYPI NSS+NP   
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNISKKEGLCGIAMLPSYPIKNSSDNPTGS 354

Query: 142 -SSPKDEL 122
            SSPKDEL
Sbjct: 355 FSSPKDEL 362

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,035,337
Number of Sequences: 1393205
Number of extensions: 10366394
Number of successful extensions: 38811
Number of sequences better than 10.0: 1146
Number of HSP's better than 10.0 without gapping: 33896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37459
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPD002b05_f AV770117 1 502
2 MPD017g12_f AV771195 1 481
3 MF004g03_f BP028460 14 433
4 SPD067d01_f BP049340 28 484




Lotus japonicus
Kazusa DNA Research Institute