KMC005001A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC005001A_C01 KMC005001A_c01
AAATCGAAATGAAAGATATGTTTATTTAGCTAGGAGATATAAGCATAAATATGTAGATGA
ATACATTGACATCAAATCTGAAACAACTTTTTCTAGCTTAGCTCATGAGATCATGAGATT
AAAGCTCATCTTTAGGAGATGAACGTGGTTTTGGATTCTCAGAGGAGTTTGGGATGGGGT
AGGAAGCCTCCATAGCTATGCCACATAGCCCCTCCTTGTCAGATATGTTCCTCTGCATTC
TGATATAACCCTGTTCTCCCCATTCTGGCCCCCAAGAGTTCTTCACTATCCAGTAGTCAG
TTCCATCAACAGTTGTTCCATATCCCACAACCGCTACACCATGATCAAGCCCCGTGCCAC
AATCGCCAGTAAATACCCCCTCTGAGTAGAATGGGAAATCAGATCCACCAGCATCTATAG
CTACAGATACAGGTGGGTTGGCAACAGCATTGAGCAACGCGGCTTCGTCGTTAGCAGGAA
CAGTCTCATGGCCATCAATTGA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005001A_C01 KMC005001A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P12412|CYSP_VIGMU Vignain precursor (Bean endopeptidase) (Cys... 223 9e-58
prf||1910332A Cys endopeptidase 223 9e-58
pir||T08122 cysteine endopeptidase (EC 3.4.22.-) precursor - cas... 221 4e-57
gb|AAA92063.1| cysteinyl endopeptidase [Vigna radiata] 221 5e-57
pir||S22502 cysteine proteinase (EC 3.4.22.-) - kidney bean 220 6e-57
>sp|P12412|CYSP_VIGMU Vignain precursor (Bean endopeptidase) (Cysteine proteinase)
(Sulfhydryl-endopeptidase) (SH-EP) gi|82006|pir||S12581
cysteine proteinase (EC 3.4.22.-) precursor - black gram
gi|22062|emb|CAA33753.1| sulfhydryl-pre-endopeptidase
(AA -20 to 342) [Vigna mungo] gi|22066|emb|CAA36181.1|
sulfhydryl-endopeptidase [Vigna mungo]
Length = 362
Score = 223 bits (568), Expect = 9e-58
Identities = 108/128 (84%), Positives = 113/128 (87%), Gaps = 1/128 (0%)
Frame = -1
Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVG 294
Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPK-P 146
YGTTVDGT+YWIV+NSWGPEWGEQGYIRMQRNIS KEGLCGIAM ASYPI NSS+NP
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGS 354
Query: 145 RSSPKDEL 122
SSPKDEL
Sbjct: 355 LSSPKDEL 362
>prf||1910332A Cys endopeptidase
Length = 362
Score = 223 bits (568), Expect = 9e-58
Identities = 108/128 (84%), Positives = 113/128 (87%), Gaps = 1/128 (0%)
Frame = -1
Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVG 294
Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPK-P 146
YGTTVDGT+YWIV+NSWGPEWGEQGYIRMQRNIS KEGLCGIAM ASYPI NSS+NP
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGS 354
Query: 145 RSSPKDEL 122
SSPKDEL
Sbjct: 355 LSSPKDEL 362
>pir||T08122 cysteine endopeptidase (EC 3.4.22.-) precursor - castor bean
gi|2944446|gb|AAC62396.1| cysteine endopeptidase
precursor [Ricinus communis]
Length = 360
Score = 221 bits (563), Expect = 4e-57
Identities = 106/128 (82%), Positives = 111/128 (85%), Gaps = 1/128 (0%)
Frame = -1
Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTG CGT LDHGVA+VG
Sbjct: 233 SIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVG 292
Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPKP- 146
YGTT+DGT YW VKNSWGPEWGE+GYIRM+R ISDKEGLCGIAMEASYPI SS NP
Sbjct: 293 YGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNNPSGI 352
Query: 145 RSSPKDEL 122
+SSPKDEL
Sbjct: 353 KSSPKDEL 360
>gb|AAA92063.1| cysteinyl endopeptidase [Vigna radiata]
Length = 362
Score = 221 bits (562), Expect = 5e-57
Identities = 107/128 (83%), Positives = 112/128 (86%), Gaps = 1/128 (0%)
Frame = -1
Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
SIDGHE VP NDE ALL AVAN PVSVAIDAGGSDF FYSEGV TGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVLTGDCNTDLNHGVAIVG 294
Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPKPR 143
YGTTVDGT+YWIV+NSWGPEWGEQGYIRMQRNIS KEGLCGIAM ASYPI NSS+NP
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGS 354
Query: 142 -SSPKDEL 122
SSPKDEL
Sbjct: 355 FSSPKDEL 362
>pir||S22502 cysteine proteinase (EC 3.4.22.-) - kidney bean
Length = 362
Score = 220 bits (561), Expect = 6e-57
Identities = 107/128 (83%), Positives = 112/128 (86%), Gaps = 1/128 (0%)
Frame = -1
Query: 502 SIDGHETVPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLDHGVAVVG 323
SIDGHE VPANDE ALL AVAN PVSVAIDAGGSDF FYSEGVFTGDC T L+HGVA+VG
Sbjct: 235 SIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTDLNHGVAIVG 294
Query: 322 YGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNSSENPKPR 143
YGTTVDGT+YWIV+NSWGPEWGE GYIRMQRNIS KEGLCGIAM SYPI NSS+NP
Sbjct: 295 YGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNISKKEGLCGIAMLPSYPIKNSSDNPTGS 354
Query: 142 -SSPKDEL 122
SSPKDEL
Sbjct: 355 FSSPKDEL 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,035,337
Number of Sequences: 1393205
Number of extensions: 10366394
Number of successful extensions: 38811
Number of sequences better than 10.0: 1146
Number of HSP's better than 10.0 without gapping: 33896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37459
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MPD002b05_f |
AV770117 |
1 |
502 |
2 |
MPD017g12_f |
AV771195 |
1 |
481 |
3 |
MF004g03_f |
BP028460 |
14 |
433 |
4 |
SPD067d01_f |
BP049340 |
28 |
484 |
|
Lotus japonicus
Kazusa DNA Research Institute