Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004998A_C01 KMC004998A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02532 hypothetical protein At2g37660 [imported] - Arabidop... 127 1e-28
ref|NP_565868.1| expressed protein; protein id: At2g37660.1, sup... 127 1e-28
gb|AAO18441.1| unknown protein [Oryza sativa (japonica cultivar-... 119 3e-26
gb|AAK73149.1|AC079022_22 putative 3-beta hydroxysteroid dehydro... 117 9e-26
pir||T48245 hypothetical protein T7H20.290 - Arabidopsis thalian... 105 3e-22
>pir||T02532 hypothetical protein At2g37660 [imported] - Arabidopsis thaliana
Length = 337
Score = 127 bits (318), Expect = 1e-28
Identities = 71/117 (60%), Positives = 88/117 (74%), Gaps = 7/117 (5%)
Frame = +2
Query: 221 TSLQF----SHSSSL---SLATHKRVRTRTSVVAMADSSRSTVLVTGAGGRTGKIVYKKL 379
+SLQF S S+S+ S T K R +V A A + TVLVTGAGGRTG+IVYKKL
Sbjct: 37 SSLQFRSLVSDSTSICGPSKFTGKNRRVSVTVSAAATTEPLTVLVTGAGGRTGQIVYKKL 96
Query: 380 QERSSQYIARGLVRTEESKQTIGASDDVYVGDITDTGSIAPAMQGIDALIILTSAVP 550
+ERS Q++ARGLVRT+ESK+ I D+V++GDI DT SIAPA++GIDAL+ILTSAVP
Sbjct: 97 KERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVP 153
>ref|NP_565868.1| expressed protein; protein id: At2g37660.1, supported by cDNA:
13797., supported by cDNA: gi_14596078, supported by
cDNA: gi_20148254 [Arabidopsis thaliana]
gi|22096383|sp|O80934|Y230_ARATH Protein At2g37660,
chloroplast precursor gi|14596079|gb|AAK68767.1| Unknown
protein [Arabidopsis thaliana]
gi|20148255|gb|AAM10018.1| unknown protein [Arabidopsis
thaliana] gi|20197253|gb|AAC23636.2| expressed protein
[Arabidopsis thaliana] gi|21537410|gb|AAM61751.1|
putative 3-beta hydroxysteroid dehydrogenase/isomerase
protein [Arabidopsis thaliana]
Length = 325
Score = 127 bits (318), Expect = 1e-28
Identities = 71/117 (60%), Positives = 88/117 (74%), Gaps = 7/117 (5%)
Frame = +2
Query: 221 TSLQF----SHSSSL---SLATHKRVRTRTSVVAMADSSRSTVLVTGAGGRTGKIVYKKL 379
+SLQF S S+S+ S T K R +V A A + TVLVTGAGGRTG+IVYKKL
Sbjct: 37 SSLQFRSLVSDSTSICGPSKFTGKNRRVSVTVSAAATTEPLTVLVTGAGGRTGQIVYKKL 96
Query: 380 QERSSQYIARGLVRTEESKQTIGASDDVYVGDITDTGSIAPAMQGIDALIILTSAVP 550
+ERS Q++ARGLVRT+ESK+ I D+V++GDI DT SIAPA++GIDAL+ILTSAVP
Sbjct: 97 KERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVP 153
>gb|AAO18441.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 257
Score = 119 bits (297), Expect = 3e-26
Identities = 61/85 (71%), Positives = 69/85 (80%), Gaps = 2/85 (2%)
Frame = +2
Query: 302 MADSS--RSTVLVTGAGGRTGKIVYKKLQERSSQYIARGLVRTEESKQTIGASDDVYVGD 475
MADSS R TVLVTGAGGRTG IVY KL+ERS Q++ RGLVRTEESKQ IG +DVY+ D
Sbjct: 1 MADSSAARPTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIAD 60
Query: 476 ITDTGSIAPAMQGIDALIILTSAVP 550
I D + PA+QG+DALIILTSAVP
Sbjct: 61 IRDRDHLVPAVQGVDALIILTSAVP 85
>gb|AAK73149.1|AC079022_22 putative 3-beta hydroxysteroid dehydrogenase/isomerase protein
[Oryza sativa]
Length = 293
Score = 117 bits (293), Expect = 9e-26
Identities = 61/86 (70%), Positives = 69/86 (79%)
Frame = +2
Query: 293 VVAMADSSRSTVLVTGAGGRTGKIVYKKLQERSSQYIARGLVRTEESKQTIGASDDVYVG 472
V A A TVLVTGAGGRTG+IVYKKL+ER+ Q++ RGLVRTEESK IG + DV+VG
Sbjct: 36 VSAAAGGPLPTVLVTGAGGRTGQIVYKKLKERADQFVGRGLVRTEESKAKIGGAADVFVG 95
Query: 473 DITDTGSIAPAMQGIDALIILTSAVP 550
DI D SIAPA+ GIDALIILTSAVP
Sbjct: 96 DIRDPASIAPAIDGIDALIILTSAVP 121
>pir||T48245 hypothetical protein T7H20.290 - Arabidopsis thaliana
gi|7340698|emb|CAB82997.1| putative protein [Arabidopsis
thaliana]
Length = 376
Score = 105 bits (263), Expect = 3e-22
Identities = 51/76 (67%), Positives = 63/76 (82%)
Frame = +2
Query: 323 TVLVTGAGGRTGKIVYKKLQERSSQYIARGLVRTEESKQTIGASDDVYVGDITDTGSIAP 502
TVLVTGA GRTG+IVYKKL+E S +++A+GLVR+ + K+ IG DV++GDITD SI P
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP 65
Query: 503 AMQGIDALIILTSAVP 550
A QGIDAL+ILTSAVP
Sbjct: 66 AFQGIDALVILTSAVP 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,393,274
Number of Sequences: 1393205
Number of extensions: 9761319
Number of successful extensions: 25844
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 24878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25794
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
