Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004995A_C01 KMC004995A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174170.1| glutaredoxin, putative; protein id: At1g28480.1... 100 1e-20
dbj|BAB84490.1| P0014E08.1 [Oryza sativa (japonica cultivar-grou... 83 3e-15
ref|NP_563691.1| expressed protein; protein id: At1g03850.1, sup... 82 4e-15
emb|CAD40555.1| OSJNBa0072K14.11 [Oryza sativa (japonica cultiva... 82 5e-15
ref|NP_196911.1| glutaredoxin-like protein; protein id: At5g1407... 77 1e-13
>ref|NP_174170.1| glutaredoxin, putative; protein id: At1g28480.1, supported by cDNA:
gi_13358219 [Arabidopsis thaliana]
gi|25403346|pir||H86410 protein F3M18.8 [imported] -
Arabidopsis thaliana gi|6560751|gb|AAF16751.1|AC010155_4
F3M18.8 [Arabidopsis thaliana]
gi|11762208|gb|AAG40382.1|AF325030_1 At1g28480
[Arabidopsis thaliana]
Length = 137
Score = 100 bits (249), Expect = 1e-20
Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Frame = -3
Query: 570 HVVKRLLLGLGVNPATHEVEEKDEVDFTRELE--AILDDGKLLQFPVVFIGGKLFGGLER 397
HVV+RLLLGLGVNPA E++E+ E + ELE + G ++ P V++GG+LFGGL+R
Sbjct: 56 HVVRRLLLGLGVNPAVLEIDEEREDEVLSELENIGVQGGGGTVKLPAVYVGGRLFGGLDR 115
Query: 396 LMATHISGELVPLLKPAGALWL 331
+MATHISGELVP+LK GALWL
Sbjct: 116 VMATHISGELVPILKEVGALWL 137
>dbj|BAB84490.1| P0014E08.1 [Oryza sativa (japonica cultivar-group)]
gi|20161587|dbj|BAB90508.1| OSJNBb0063G05.17 [Oryza
sativa (japonica cultivar-group)]
Length = 147
Score = 82.8 bits (203), Expect = 3e-15
Identities = 44/76 (57%), Positives = 51/76 (66%)
Frame = -3
Query: 570 HVVKRLLLGLGVNPATHEVEEKDEVDFTRELEAILDDGKLLQFPVVFIGGKLFGGLERLM 391
HVVKRLL GLGVNPA HEV + + + G+ P VF+GGKL GGL+RLM
Sbjct: 73 HVVKRLLQGLGVNPAVHEVAGEAALK-----GVVPAGGEAAALPAVFVGGKLLGGLDRLM 127
Query: 390 ATHISGELVPLLKPAG 343
A HISGELVP+LK AG
Sbjct: 128 AVHISGELVPILKKAG 143
>ref|NP_563691.1| expressed protein; protein id: At1g03850.1, supported by cDNA:
271253., supported by cDNA: gi_14334677, supported by
cDNA: gi_17104674 [Arabidopsis thaliana]
gi|14334678|gb|AAK59517.1| unknown protein [Arabidopsis
thaliana] gi|17104675|gb|AAL34226.1| unknown protein
[Arabidopsis thaliana] gi|21555130|gb|AAM63783.1|
unknown [Arabidopsis thaliana]
Length = 150
Score = 82.4 bits (202), Expect = 4e-15
Identities = 44/80 (55%), Positives = 57/80 (71%)
Frame = -3
Query: 570 HVVKRLLLGLGVNPATHEVEEKDEVDFTRELEAILDDGKLLQFPVVFIGGKLFGGLERLM 391
HV KRLLL GVNP E+ E+D ++ + I+ D + L P+++IGGKLFGGLE LM
Sbjct: 77 HVAKRLLLTHGVNPVVVEIGEEDNNNY----DNIVSDKEKL--PMMYIGGKLFGGLENLM 130
Query: 390 ATHISGELVPLLKPAGALWL 331
A HI+G+LVP L+ AGALWL
Sbjct: 131 AAHINGDLVPTLRQAGALWL 150
>emb|CAD40555.1| OSJNBa0072K14.11 [Oryza sativa (japonica cultivar-group)]
Length = 135
Score = 82.0 bits (201), Expect = 5e-15
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Frame = -3
Query: 570 HVVKRLLLGLGVNPATHEVE-EKDEVDFTRELEAILDDG--KLLQFPVVFIGGKLFGGLE 400
H VKRL G+GV+PA HE++ + D R L ++ G PVVFIGGKL G ++
Sbjct: 53 HAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMD 112
Query: 399 RLMATHISGELVPLLKPAGALWL 331
R+MA HI+G LVPLLK AGALWL
Sbjct: 113 RVMAAHINGSLVPLLKEAGALWL 135
>ref|NP_196911.1| glutaredoxin-like protein; protein id: At5g14070.1, supported by
cDNA: 123496., supported by cDNA: gi_13605642, supported
by cDNA: gi_15777880 [Arabidopsis thaliana]
gi|9757788|dbj|BAB08286.1| glutaredoxin-like protein
[Arabidopsis thaliana]
gi|13605643|gb|AAK32815.1|AF361802_1 AT5g14070/MUA22_7
[Arabidopsis thaliana] gi|15777881|gb|AAL05901.1|
AT5g14070/MUA22_7 [Arabidopsis thaliana]
Length = 140
Score = 77.4 bits (189), Expect = 1e-13
Identities = 45/89 (50%), Positives = 57/89 (63%), Gaps = 9/89 (10%)
Frame = -3
Query: 570 HVVKRLLLGLGVNPATHEVEEKDE-VDFTRELEAIL--------DDGKLLQFPVVFIGGK 418
H +KRL G+GV+PA HE++ V+ R L +L G L PVVFIGGK
Sbjct: 55 HAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGAL---PVVFIGGK 111
Query: 417 LFGGLERLMATHISGELVPLLKPAGALWL 331
+ G +ER+MA+HI+G LVPLLK AGALWL
Sbjct: 112 MVGAMERVMASHINGSLVPLLKDAGALWL 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,775,280
Number of Sequences: 1393205
Number of extensions: 9903839
Number of successful extensions: 25918
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 24725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25834
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
