Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004994A_C01 KMC004994A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62906.1| unknown [Arabidopsis thaliana] 62 6e-09
ref|NP_568606.1| expressed protein; protein id: At5g42560.1, sup... 62 6e-09
dbj|BAB09327.1| gene_id:K16E1.3~unknown protein [Arabidopsis tha... 62 6e-09
pir||H86332 T20H2.26 protein - Arabidopsis thaliana gi|8779002|g... 54 2e-06
ref|NP_564100.1| expressed protein; protein id: At1g19950.1, sup... 54 2e-06
>gb|AAM62906.1| unknown [Arabidopsis thaliana]
Length = 296
Score = 62.0 bits (149), Expect = 6e-09
Identities = 46/120 (38%), Positives = 60/120 (49%), Gaps = 1/120 (0%)
Frame = -2
Query: 630 SPTSSTSSSQFQKEVAEELGSPQVPKAASTAAVLNNQKPPVAGGLTTQKSSLAGISTQKS 451
S +SS+SS E ++ P P+ T+ + P AG TTQ + QKS
Sbjct: 184 SSSSSSSSENEGNEPTRKVSGPSRPRPTVTSVPAAD--PKNAG--TTQIA-------QKS 232
Query: 450 NPAPDTTIKSAPAPAEPKQIEAAPPSSSPANENGNPP-TKDTIMEETIRVTRGRLRKARS 274
+P + EP QIE + NEN NP K+T+MEETIR+TRGRLRK RS
Sbjct: 233 VASPIVNPPQSTTQVEPMQIEEVEGEAESGNENPNPEGPKETVMEETIRMTRGRLRKTRS 292
>ref|NP_568606.1| expressed protein; protein id: At5g42560.1, supported by cDNA:
17101. [Arabidopsis thaliana]
Length = 296
Score = 62.0 bits (149), Expect = 6e-09
Identities = 46/120 (38%), Positives = 60/120 (49%), Gaps = 1/120 (0%)
Frame = -2
Query: 630 SPTSSTSSSQFQKEVAEELGSPQVPKAASTAAVLNNQKPPVAGGLTTQKSSLAGISTQKS 451
S +SS+SS E ++ P P+ T+ + P AG TTQ + QKS
Sbjct: 184 SSSSSSSSENEGNEPTRKVSGPSRPRPTVTSVPAAD--PKNAG--TTQIA-------QKS 232
Query: 450 NPAPDTTIKSAPAPAEPKQIEAAPPSSSPANENGNPP-TKDTIMEETIRVTRGRLRKARS 274
+P + EP QIE + NEN NP K+T+MEETIR+TRGRLRK RS
Sbjct: 233 VASPIVNPPQSTTQVEPMQIEEVEGEAESGNENPNPEGPKETVMEETIRMTRGRLRKTRS 292
>dbj|BAB09327.1| gene_id:K16E1.3~unknown protein [Arabidopsis thaliana]
Length = 326
Score = 62.0 bits (149), Expect = 6e-09
Identities = 46/120 (38%), Positives = 60/120 (49%), Gaps = 1/120 (0%)
Frame = -2
Query: 630 SPTSSTSSSQFQKEVAEELGSPQVPKAASTAAVLNNQKPPVAGGLTTQKSSLAGISTQKS 451
S +SS+SS E ++ P P+ T+ + P AG TTQ + QKS
Sbjct: 214 SSSSSSSSENEGNEPTRKVSGPSRPRPTVTSVPAAD--PKNAG--TTQIA-------QKS 262
Query: 450 NPAPDTTIKSAPAPAEPKQIEAAPPSSSPANENGNPP-TKDTIMEETIRVTRGRLRKARS 274
+P + EP QIE + NEN NP K+T+MEETIR+TRGRLRK RS
Sbjct: 263 VASPIVNPPQSTTQVEPMQIEEVEGEAESGNENPNPEGPKETVMEETIRMTRGRLRKTRS 322
>pir||H86332 T20H2.26 protein - Arabidopsis thaliana
gi|8779002|gb|AAF79917.1|AC022472_26 Contains similarity
to Magnaporthe grisea pathogenicity protein (PATH531)
from Pyricularia grisea gb|AF019630. [Arabidopsis
thaliana]
Length = 304
Score = 53.5 bits (127), Expect = 2e-06
Identities = 32/67 (47%), Positives = 40/67 (58%), Gaps = 7/67 (10%)
Frame = -2
Query: 447 PAPDTTIKSAPAPAEPKQIEAAPPSSS------PANE-NGNPPTKDTIMEETIRVTRGRL 289
P+P T K PA+P EA S + PA+E +K+TIMEET+R+TRG L
Sbjct: 235 PSPTTAAKRNADPAQPSPTEAEEASQTVAALPEPASEIQRASSSKETIMEETLRITRGSL 294
Query: 288 RKARSAG 268
RKARSAG
Sbjct: 295 RKARSAG 301
>ref|NP_564100.1| expressed protein; protein id: At1g19950.1, supported by cDNA:
147130., supported by cDNA: gi_15010625 [Arabidopsis
thaliana] gi|15010626|gb|AAK73972.1| At1g19950/T20H2_25
[Arabidopsis thaliana] gi|24111285|gb|AAN46766.1|
At1g19950/T20H2_25 [Arabidopsis thaliana]
Length = 315
Score = 53.5 bits (127), Expect = 2e-06
Identities = 32/67 (47%), Positives = 40/67 (58%), Gaps = 7/67 (10%)
Frame = -2
Query: 447 PAPDTTIKSAPAPAEPKQIEAAPPSSS------PANE-NGNPPTKDTIMEETIRVTRGRL 289
P+P T K PA+P EA S + PA+E +K+TIMEET+R+TRG L
Sbjct: 246 PSPTTAAKRNADPAQPSPTEAEEASQTVAALPEPASEIQRASSSKETIMEETLRITRGSL 305
Query: 288 RKARSAG 268
RKARSAG
Sbjct: 306 RKARSAG 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,811,718
Number of Sequences: 1393205
Number of extensions: 12689632
Number of successful extensions: 62298
Number of sequences better than 10.0: 864
Number of HSP's better than 10.0 without gapping: 48156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58729
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
