Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004993A_C02 KMC004993A_c02
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC53926.1| NtEPc-like protein [Nicotiana tabacum] 44 0.002
ref|NP_194912.1| putative protein; protein id: At4g31840.1, supp... 42 0.005
pir||T52410 blue copper-binding protein II [imported] - Arabidop... 40 0.015
ref|NP_197891.1| phytocyanin-related protein-like; protein id: A... 40 0.026
sp|Q05544|N551_SOYBN EARLY NODULIN 55-1 PRECURSOR (N-55-1) gi|48... 40 0.026
>dbj|BAC53926.1| NtEPc-like protein [Nicotiana tabacum]
Length = 179
Score = 43.5 bits (101), Expect = 0.002
Identities = 27/68 (39%), Positives = 36/68 (52%)
Frame = -2
Query: 556 DGLHTIPLEREGIRYFVSSEVENCNSGLKLHVEVLPKSKSSSPNPITHTQYSTPTFLAAE 377
DG T+ L+R G YFVS + E+C +G +L +EVLP S P P LA
Sbjct: 97 DGNTTVNLDRAGPFYFVSGDPEHCKNGQRLAIEVLPLYPISQSPP-------QPISLAPS 149
Query: 376 PTSPSASA 353
P+ S+SA
Sbjct: 150 PSPLSSSA 157
>ref|NP_194912.1| putative protein; protein id: At4g31840.1, supported by cDNA:
6308., supported by cDNA: gi_19698954 [Arabidopsis
thaliana] gi|7485378|pir||T06306 hypothetical protein
F11C18.40 - Arabidopsis thaliana
gi|4584523|emb|CAB40754.1| putative protein [Arabidopsis
thaliana] gi|7270087|emb|CAB79902.1| putative protein
[Arabidopsis thaliana] gi|19698955|gb|AAL91213.1|
putative protein [Arabidopsis thaliana]
gi|21593998|gb|AAM65916.1| similar to early nodulins
[Arabidopsis thaliana] gi|27311879|gb|AAO00905.1|
putative protein [Arabidopsis thaliana]
Length = 177
Score = 42.0 bits (97), Expect = 0.005
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -2
Query: 562 YTDGLHTIPLEREGIRYFVSSEVENCNSGLKLHVEVL-PKSKSSSPNPITHTQYSTPTFL 386
YTDG + L++ G YFVS +C G KL + V+ P++ + SP P + +++ P
Sbjct: 92 YTDGNTKVKLDQAGPVYFVSGTEGHCQKGQKLRLVVITPRNSAFSPGP-SPSEFDGP--- 147
Query: 385 AAEPTSPSASARYAHNTILAFVL 317
A PTS +A + + VL
Sbjct: 148 AVAPTSGAAKLAGGFSVVFGLVL 170
>pir||T52410 blue copper-binding protein II [imported] - Arabidopsis thaliana
gi|1848237|gb|AAB47973.1| blue copper-binding protein II
Length = 199
Score = 40.4 bits (93), Expect = 0.015
Identities = 27/78 (34%), Positives = 40/78 (50%), Gaps = 8/78 (10%)
Frame = -2
Query: 562 YTDGLHTIPLEREGIRYFVSSEVENCNSGLKLHVEVL--------PKSKSSSPNPITHTQ 407
++DG I L+ GI YF+ S +C+ G+KL V V+ P SS+P T T
Sbjct: 87 HSDGDTKIDLKTVGINYFICSTTGHCSGGMKLAVNVVAGSADLRTPTPPSSTPGTPT-TP 145
Query: 406 YSTPTFLAAEPTSPSASA 353
S P+ + PT+P+ A
Sbjct: 146 ESPPSGGSPTPTTPTPGA 163
>ref|NP_197891.1| phytocyanin-related protein-like; protein id: At5g25090.1,
supported by cDNA: 270205. [Arabidopsis thaliana]
Length = 186
Score = 39.7 bits (91), Expect = 0.026
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Frame = -2
Query: 562 YTDGLHTIPLEREGIRYFVSSEVENCNSGLKLHVEVLPKS--------KSSSPNPITHTQ 407
Y++G + LER G +F+S NC G KLH+ V+ SSP+P
Sbjct: 91 YSNGDTKVKLERSGPYFFISGSKSNCVEGEKLHIVVMSSRGGHTGGFFTGSSPSPA---- 146
Query: 406 YSTPTFLAAEPTSP----SASARYAHNTILAFVLLFCV 305
+P L A +P SAS+ +L FV L +
Sbjct: 147 -PSPALLGAPTVAPASGGSASSLTRQVGVLGFVGLLAI 183
>sp|Q05544|N551_SOYBN EARLY NODULIN 55-1 PRECURSOR (N-55-1) gi|487040|pir||S37353 nodulin
(clone GmENOD55-1) - soybean (fragment)
gi|18585|emb|CAA48908.1| nodulin [Glycine max]
Length = 137
Score = 39.7 bits (91), Expect = 0.026
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 565 MYTDGLHTIPLEREGIRYFVSSEVENCNSGLKLHVEVL----PKSKSSSPNPITHTQYST 398
++ DG + L + G R+F+S +C GLKL V V+ K SP+P + + +
Sbjct: 29 LFNDGNTKVMLTKSGFRHFISGNQSHCQMGLKLMVVVMSNNTKKKLIHSPSPSSPSPSPS 88
Query: 397 PTFLAAEPTSPSASA 353
P+ + SPS S+
Sbjct: 89 PSPSPSPSPSPSLSS 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,180,223
Number of Sequences: 1393205
Number of extensions: 10176307
Number of successful extensions: 29178
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 27579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29141
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
