Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004992A_C02 KMC004992A_c02
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42314.1| unknown protein [Arabidopsis thaliana] 119 3e-26
ref|NP_194940.2| hypothetical protein; protein id: At4g32130.1, ... 117 1e-25
ref|NP_180103.1| unknown protein; protein id: At2g25310.1 [Arabi... 114 8e-25
emb|CAB99182.2| conserved hypothetical protein [Neurospora crass... 46 4e-04
ref|NP_595642.1| hypothetical protein [Schizosaccharomyces pombe... 33 2.5
>gb|AAO42314.1| unknown protein [Arabidopsis thaliana]
Length = 210
Score = 119 bits (298), Expect = 3e-26
Identities = 57/68 (83%), Positives = 64/68 (93%)
Frame = -2
Query: 642 YEIREPFSVMSIVKSPMGLMMGFMVIVVFLMPKLMENMDPEEMKRAQEEMRSQGVPSLAS 463
YEIREPF++MSIVKSPMGLM+GFMV+VVFLMPKLMEN+DPEEMK+AQEEMR QGVPSL S
Sbjct: 142 YEIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVPSLTS 201
Query: 462 LLPGSARS 439
LLPG+ S
Sbjct: 202 LLPGAGAS 209
>ref|NP_194940.2| hypothetical protein; protein id: At4g32130.1, supported by cDNA:
gi_18252218 [Arabidopsis thaliana]
gi|18252219|gb|AAL61942.1| unknown protein [Arabidopsis
thaliana] gi|21387053|gb|AAM47930.1| unknown protein
[Arabidopsis thaliana]
Length = 202
Score = 117 bits (293), Expect = 1e-25
Identities = 57/65 (87%), Positives = 62/65 (94%)
Frame = -2
Query: 642 YEIREPFSVMSIVKSPMGLMMGFMVIVVFLMPKLMENMDPEEMKRAQEEMRSQGVPSLAS 463
YE+REPFSVMSIVKSPMGLM+GFMV+VVFLMPKLMEN+DPEEMK AQE+MRSQGVPSL S
Sbjct: 137 YEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVPSLTS 196
Query: 462 LLPGS 448
LLP S
Sbjct: 197 LLPAS 201
>ref|NP_180103.1| unknown protein; protein id: At2g25310.1 [Arabidopsis thaliana]
gi|25337662|pir||H84646 hypothetical protein At2g25310
[imported] - Arabidopsis thaliana
gi|4567246|gb|AAD23660.1| unknown protein [Arabidopsis
thaliana]
Length = 198
Score = 114 bits (286), Expect = 8e-25
Identities = 55/66 (83%), Positives = 62/66 (93%)
Frame = -2
Query: 636 IREPFSVMSIVKSPMGLMMGFMVIVVFLMPKLMENMDPEEMKRAQEEMRSQGVPSLASLL 457
IREPF++MSIVKSPMGLM+GFMV+VVFLMPKLMEN+DPEEMK+AQEEMR QGVPSL SLL
Sbjct: 132 IREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVPSLTSLL 191
Query: 456 PGSARS 439
PG+ S
Sbjct: 192 PGAGAS 197
>emb|CAB99182.2| conserved hypothetical protein [Neurospora crassa]
gi|28917333|gb|EAA27041.1| hypothetical protein (
(AL390189) conserved hypothetical protein [Neurospora
crassa] )
Length = 273
Score = 46.2 bits (108), Expect = 4e-04
Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = -2
Query: 633 REPFSVMSIVKSPMGLMMGFMVIVVFL-MPKLMENMDPEEMKRAQEEMRSQGVPSL 469
R FS++SI+++PM +++G + +V+FL MPKL+ENMDPE +E + + +L
Sbjct: 170 RSKFSILSILRNPM-ILLGLVSMVIFLGMPKLVENMDPEMRAEWEENQKKNPMNAL 224
>ref|NP_595642.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491741|pir||T40699 hypothetical protein SPBC83.10 -
fission yeast (Schizosaccharomyces pombe)
gi|4455783|emb|CAB36872.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 189
Score = 33.5 bits (75), Expect = 2.5
Identities = 17/47 (36%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Frame = -2
Query: 636 IREP--FSVMSIVKSPMGLMMGFMVIVVFLMPKLMENMDPEEMKRAQ 502
++EP FS++ ++KSPM L+ V++VF++PKL N++ + +++A+
Sbjct: 135 LKEPRKFSLIRLLKSPMMLLSLASVVLVFILPKL--NIEAKALEQAR 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,304,043
Number of Sequences: 1393205
Number of extensions: 11379476
Number of successful extensions: 29583
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 26394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28908
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
