Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004990A_C01 KMC004990A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16464.1| P0019D06.23 [Oryza sativa (japonica cultivar-gro... 122 2e-27
ref|NP_567025.1| Expressed protein; protein id: At3g55605.1, sup... 113 1e-24
pir||T47699 hypothetical protein F1I16.10 - Arabidopsis thaliana... 113 1e-24
pir||T01009 hypothetical protein At2g39790 [imported] - Arabidop... 110 1e-23
gb|AAM65436.1| unknown [Arabidopsis thaliana] 110 1e-23
>dbj|BAB16464.1| P0019D06.23 [Oryza sativa (japonica cultivar-group)]
gi|13486890|dbj|BAB40119.1| P0024G09.11 [Oryza sativa
(japonica cultivar-group)]
Length = 264
Score = 122 bits (307), Expect = 2e-27
Identities = 79/176 (44%), Positives = 105/176 (58%), Gaps = 10/176 (5%)
Frame = +1
Query: 67 PLLRSFAAAGQLIKKTQPGHRAALFAAVNQLHRHQDSVVPRFHFSSVAVKNKPTSDETLL 246
PLLR+ A+A + R AA R Q +P FSS A +P+SD LL
Sbjct: 16 PLLRASASAAGTTRGAAALLRPLAAAAAA---RPQPRSMP---FSS-APSTRPSSDGELL 68
Query: 247 RVIESEITCAEETDDHSAEEDLPKNFPFKIVDNPGNQTITLERTYQGEEIKVQVDMPDLV 426
R+I++EI AEE+DDH E++P NFPFKI D G +ITL RTYQGE I+V V MP LV
Sbjct: 69 RIIDAEIKFAEESDDHDRVEEIPDNFPFKISDEKGFNSITLTRTYQGENIEVLVSMPSLV 128
Query: 427 TGEENGVDGGGD---------DESERASQSSLPLSVSVSK-KGGPFLEFSCMAYSD 564
TG+E + D +E+++A +SS+PL+V++SK + GP LEF C AY D
Sbjct: 129 TGDEPDRENEADEDRNEDDQEEETQKAPKSSIPLTVTISKGEEGPSLEFICTAYPD 184
>ref|NP_567025.1| Expressed protein; protein id: At3g55605.1, supported by cDNA:
250217. [Arabidopsis thaliana]
gi|21554314|gb|AAM63419.1| unknown [Arabidopsis
thaliana]
Length = 258
Score = 113 bits (283), Expect = 1e-24
Identities = 61/117 (52%), Positives = 83/117 (70%), Gaps = 5/117 (4%)
Frame = +1
Query: 229 SDETLLRVIESEITCAEETDDHSAEEDL--PKNFPFKIVDNPGNQTITLERTYQGEEIKV 402
SD+TL++VI+SEI + E DDH A+E+ +FPFKI DNPG++T+TL R Y GE+IKV
Sbjct: 62 SDQTLIQVIDSEIKDSFEADDHDADEETIDSSDFPFKIEDNPGHRTVTLTREYNGEQIKV 121
Query: 403 QVDMPDLVTGE-ENGVDG--GGDDESERASQSSLPLSVSVSKKGGPFLEFSCMAYSD 564
+V MP L E E+ VD GD E++++SS+PL V+V+KK G LEFSC A+ D
Sbjct: 122 EVSMPGLAMDENEDDVDDDEDGDGRHEKSNESSIPLVVTVTKKSGLSLEFSCTAFPD 178
>pir||T47699 hypothetical protein F1I16.10 - Arabidopsis thaliana
gi|7263548|emb|CAB81585.1| putative protein [Arabidopsis
thaliana]
Length = 474
Score = 113 bits (283), Expect = 1e-24
Identities = 61/117 (52%), Positives = 83/117 (70%), Gaps = 5/117 (4%)
Frame = +1
Query: 229 SDETLLRVIESEITCAEETDDHSAEEDL--PKNFPFKIVDNPGNQTITLERTYQGEEIKV 402
SD+TL++VI+SEI + E DDH A+E+ +FPFKI DNPG++T+TL R Y GE+IKV
Sbjct: 278 SDQTLIQVIDSEIKDSFEADDHDADEETIDSSDFPFKIEDNPGHRTVTLTREYNGEQIKV 337
Query: 403 QVDMPDLVTGE-ENGVDG--GGDDESERASQSSLPLSVSVSKKGGPFLEFSCMAYSD 564
+V MP L E E+ VD GD E++++SS+PL V+V+KK G LEFSC A+ D
Sbjct: 338 EVSMPGLAMDENEDDVDDDEDGDGRHEKSNESSIPLVVTVTKKSGLSLEFSCTAFPD 394
>pir||T01009 hypothetical protein At2g39790 [imported] - Arabidopsis thaliana
Length = 429
Score = 110 bits (275), Expect = 1e-23
Identities = 57/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Frame = +1
Query: 226 TSDETLLRVIESEITCAEETDDHSAEEDL-PKNFPFKIVDNPGNQTITLERTYQGEEIKV 402
+S++TL+RVI+SEI A ++D+ ++E++ P +FPF+I D PGNQ +TL R Y GE IKV
Sbjct: 239 SSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIEDKPGNQNVTLTRDYNGEHIKV 298
Query: 403 QVDMPDLVTGEENGVDGGGDDESERASQSSLPLSVSVSKKGGPFLEFSCMAYSD 564
V MP LV+ E D DD+ +++SS+PL V+V+KK G LEFSCMA+ D
Sbjct: 299 VVSMPSLVSDEN---DDDDDDDEGPSNESSIPLVVTVTKKSGLTLEFSCMAFPD 349
Score = 83.2 bits (204), Expect = 2e-15
Identities = 66/178 (37%), Positives = 97/178 (54%), Gaps = 1/178 (0%)
Frame = +1
Query: 34 MAFNSILRKSSPLLRSFAAAGQLIKKTQPGHRAALFAAVNQLHRHQDSVVPRFHFSSVAV 213
MAF +R+S+ L S A GQ + +R +L + L V R ++AV
Sbjct: 1 MAFAWCVRRSASKLAS--ACGQARSISAVVNRPSLALNPSPL----SPFVSRGFLYTMAV 54
Query: 214 KNKPTSDETLLRVIESEITCAEETDDHSAEEDL-PKNFPFKIVDNPGNQTITLERTYQGE 390
+K +S++TL VI+SE+ A +TDD + E++ P +FP KI D PG+Q++TL Y E
Sbjct: 55 -DKLSSEQTLHLVIDSELNSALQTDDPNLNEEMAPGSFPLKIRDKPGDQSVTLTAYYNDE 113
Query: 391 EIKVQVDMPDLVTGEENGVDGGGDDESERASQSSLPLSVSVSKKGGPFLEFSCMAYSD 564
I V V MP L ++ +D G + E S PL V+V KK G +EF+C AY+D
Sbjct: 114 RIHVDVGMPYL---GDDVIDVFGPNNDE----LSFPLVVTVIKKNGVSIEFTCQAYAD 164
>gb|AAM65436.1| unknown [Arabidopsis thaliana]
Length = 250
Score = 110 bits (275), Expect = 1e-23
Identities = 57/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Frame = +1
Query: 226 TSDETLLRVIESEITCAEETDDHSAEEDL-PKNFPFKIVDNPGNQTITLERTYQGEEIKV 402
+S++TL+RVI+SEI A ++D+ ++E++ P +FPF+I D PGNQ +TL R Y GE IKV
Sbjct: 60 SSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIEDKPGNQNVTLTRDYNGEHIKV 119
Query: 403 QVDMPDLVTGEENGVDGGGDDESERASQSSLPLSVSVSKKGGPFLEFSCMAYSD 564
V MP LV+ E D DD+ +++SS+PL V+V+KK G LEFSCMA+ D
Sbjct: 120 VVSMPSLVSDEN---DDDDDDDEGPSNESSIPLVVTVTKKSGLTLEFSCMAFPD 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,441,695
Number of Sequences: 1393205
Number of extensions: 12416528
Number of successful extensions: 59849
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 44908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55092
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
