Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004988A_C01 KMC004988A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_047069.1| L4171.3 [Leishmania major] gi|7494060|pir||T028... 30 0.014
ref|NP_681132.1| ORF_ID:tlr0342~hypothetical protein [Thermosyne... 29 0.059
gb|AAM27208.1|AF503508_1 porin [Trypanosoma cruzi] 37 0.11
gb|AAF73445.1|AF263616_1 LYT1p [Trypanosoma cruzi] 37 0.11
emb|CAA61073.1| verprolin [Saccharomyces cerevisiae] 30 0.11
>ref|NP_047069.1| L4171.3 [Leishmania major] gi|7494060|pir||T02831 AAA protein
L4171.3 [imported] - Leishmania major (strain Friedlin)
gi|2266909|gb|AAC24654.1| L4171.3 [Leishmania major]
Length = 1541
Score = 29.6 bits (65), Expect(2) = 0.014
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 389 PPPPPPPPCLATIYLDEVQAMPLRAAEALGSHRF*VYLLAG 267
PPPPPPPP +A V L A + +F LL+G
Sbjct: 423 PPPPPPPPTVAANARVSVGNATLAALNSKEPPKFSCVLLSG 463
Score = 29.6 bits (65), Expect(2) = 0.014
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 425 VLLLSKAGTLRFPPPPPPPP 366
+++++ G PPPPPPPP
Sbjct: 409 MMMMNHTGGAMMPPPPPPPP 428
>ref|NP_681132.1| ORF_ID:tlr0342~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294063|dbj|BAC07894.1|
ORF_ID:tlr0342~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 180
Score = 29.3 bits (64), Expect(2) = 0.059
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 389 PPPPPPPPCLATIYLDEVQA 330
PPPPPPPP +++ D ++A
Sbjct: 141 PPPPPPPPRISSDLNDPIEA 160
Score = 28.1 bits (61), Expect(2) = 0.059
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 419 LLSKAGTLRFPPPPPPPP 366
++++ T PPPPPPPP
Sbjct: 130 VMNRVPTTSAPPPPPPPP 147
>gb|AAM27208.1|AF503508_1 porin [Trypanosoma cruzi]
Length = 552
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -1
Query: 461 SHQRVTCQKVVAVLLLSKAGTLRFPPPPPPPP 366
SH R T VV + S+ GT PPPPPPPP
Sbjct: 392 SHHRSTEGDVVRLAAKSRKGTRSVPPPPPPPP 423
>gb|AAF73445.1|AF263616_1 LYT1p [Trypanosoma cruzi]
Length = 552
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -1
Query: 461 SHQRVTCQKVVAVLLLSKAGTLRFPPPPPPPP 366
SH R T VV + S+ GT PPPPPPPP
Sbjct: 392 SHHRSTEGDVVRLAAKSRKGTRSVPPPPPPPP 423
>emb|CAA61073.1| verprolin [Saccharomyces cerevisiae]
Length = 817
Score = 29.6 bits (65), Expect(2) = 0.11
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 413 SKAGTLRFPPPPPPPP 366
+KA ++ PPPPPPPP
Sbjct: 390 NKASSMPAPPPPPPPP 405
Score = 26.6 bits (57), Expect(2) = 0.11
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 389 PPPPPPPPCLATIYLDEVQAMPL 321
PPPPPPP +T ++PL
Sbjct: 400 PPPPPPPGAFSTSSALSASSIPL 422
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,089,759
Number of Sequences: 1393205
Number of extensions: 13003540
Number of successful extensions: 128419
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 55789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100739
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
