Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004987A_C01 KMC004987A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LF79|ACA8_ARATH Calcium-transporting ATPase 8, plasma membr... 67 1e-10
dbj|BAA97361.1| Ca2+-transporting ATPase-like protein [Arabidops... 65 3e-10
ref|NP_200521.2| calcium-transporting ATPase; protein id: At5g57... 65 3e-10
ref|NP_194719.1| potential calcium-transporting ATPase 10, plasm... 65 5e-10
pir||T08551 Ca2+-transporting ATPase homolog F27B13.140 - Arabid... 65 5e-10
>sp|Q9LF79|ACA8_ARATH Calcium-transporting ATPase 8, plasma membrane-type (Ca2+-ATPase,
isoform 8) gi|25290678|pir||T52654 Ca2+-transporting
ATPase (EC 3.6.3.8) aca8, plasma membrane [validated] -
Arabidopsis thaliana gi|8919831|emb|CAB96189.1| plasma
membrane Ca2+-ATPase [Arabidopsis thaliana]
gi|17978917|gb|AAL47426.1| AT5g57110/MUL3_5 [Arabidopsis
thaliana]
Length = 1074
Score = 66.6 bits (161), Expect = 1e-10
Identities = 35/64 (54%), Positives = 42/64 (64%), Gaps = 1/64 (1%)
Frame = -1
Query: 464 LNWKQWLICVIIGFIGWPLAVVGKFIPVPETPVNNYFSRTFQRVKRI-FWRTSGKKEEPE 288
LNWKQWLICV IG I WPLA+VGKFIPVP P++N ++K + FW GKK+
Sbjct: 1020 LNWKQWLICVGIGVISWPLALVGKFIPVPAAPISN-------KLKVLKFW---GKKKNSS 1069
Query: 287 TEAS 276
E S
Sbjct: 1070 GEGS 1073
>dbj|BAA97361.1| Ca2+-transporting ATPase-like protein [Arabidopsis thaliana]
Length = 1099
Score = 65.5 bits (158), Expect = 3e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 464 LNWKQWLICVIIGFIGWPLAVVGKFIPVPETPVNN 360
LNWKQWLICV IG I WPLA+VGKFIPVP P++N
Sbjct: 1037 LNWKQWLICVGIGVISWPLALVGKFIPVPAAPISN 1071
>ref|NP_200521.2| calcium-transporting ATPase; protein id: At5g57110.1 [Arabidopsis
thaliana]
Length = 1082
Score = 65.5 bits (158), Expect = 3e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 464 LNWKQWLICVIIGFIGWPLAVVGKFIPVPETPVNN 360
LNWKQWLICV IG I WPLA+VGKFIPVP P++N
Sbjct: 1020 LNWKQWLICVGIGVISWPLALVGKFIPVPAAPISN 1054
>ref|NP_194719.1| potential calcium-transporting ATPase 10, plasma membrane-type
(Ca2+-ATPase, isoform 10); protein id: At4g29900.1
[Arabidopsis thaliana] gi|12643856|sp|Q9SZR1|ACAA_ARATH
Potential calcium-transporting ATPase 10, plasma
membrane-type (Ca2+-ATPase, isoform 10)
gi|25290667|pir||C85349 Ca2+-transporting ATPase-like
protein [imported] - Arabidopsis thaliana
gi|7269889|emb|CAB79748.1| Ca2+-transporting ATPase-like
protein [Arabidopsis thaliana]
Length = 1069
Score = 64.7 bits (156), Expect = 5e-10
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = -1
Query: 464 LNWKQWLICVIIGFIGWPLAVVGKFIPVPETPVNNYF 354
L+W+ WL+C+ IG I WPLAV+GK IPVPETPV+ YF
Sbjct: 1022 LDWEMWLVCIGIGSISWPLAVIGKLIPVPETPVSQYF 1058
>pir||T08551 Ca2+-transporting ATPase homolog F27B13.140 - Arabidopsis thaliana
gi|4914414|emb|CAB43665.1| Ca2+-transporting ATPase-like
protein [Arabidopsis thaliana]
Length = 1093
Score = 64.7 bits (156), Expect = 5e-10
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = -1
Query: 464 LNWKQWLICVIIGFIGWPLAVVGKFIPVPETPVNNYF 354
L+W+ WL+C+ IG I WPLAV+GK IPVPETPV+ YF
Sbjct: 1046 LDWEMWLVCIGIGSISWPLAVIGKLIPVPETPVSQYF 1082
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,202,883
Number of Sequences: 1393205
Number of extensions: 6686984
Number of successful extensions: 16979
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 16622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16977
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
