Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004983A_C01 KMC004983A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00058910.1| hypothetical protein [Thermobifida fusca] 32 5.0
ref|NP_442755.1| unknown protein [Synechocystis sp. PCC 6803] gi... 32 5.0
emb|CAA27765.1| prepro-vWF (aa -22 to 1378) [Homo sapiens] 31 8.5
ref|NP_000543.1| von Willebrand factor precursor; Coagulation fa... 31 8.5
emb|CAA27972.1| VWF pre-pro-polypeptide (-22 to 2791) [Homo sapi... 31 8.5
>gb|ZP_00058910.1| hypothetical protein [Thermobifida fusca]
Length = 239
Score = 31.6 bits (70), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 283 VERIILAECAVYNLTTPDGHSHS*QIDHLH 372
VE + ECA Y TT DG SHS ++ H
Sbjct: 143 VETVPSDECATYEATTEDGSSHSYRVRQFH 172
>ref|NP_442755.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469382|pir||S75979
hypothetical protein - Synechocystis sp. (strain PCC
6803)
Length = 170
Score = 31.6 bits (70), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +2
Query: 50 YFLFELSCKLQEIHHTYVGDQRRRSPWRGSKASNLS 157
YFL E K ++ H Y+GD+R R+ W + LS
Sbjct: 117 YFLVEACSKAKDEDHVYLGDRRHRNFWADLGRTKLS 152
>emb|CAA27765.1| prepro-vWF (aa -22 to 1378) [Homo sapiens]
Length = 1400
Score = 30.8 bits (68), Expect = 8.5
Identities = 23/67 (34%), Positives = 33/67 (48%)
Frame = +1
Query: 133 GKQGFKFKFTTPTIATTRVLGFLSPG*WYLYGQCSHIYPRYNRNRNLNPKVERIILAECA 312
G QG F T +A RV F + W L+G C + +++ LNP++ R CA
Sbjct: 529 GNQGDDF-LTPSGLAEPRVEDFGNA--WKLHGDCQDLQKQHSDPCALNPRMTRFSEEACA 585
Query: 313 VYNLTTP 333
V LT+P
Sbjct: 586 V--LTSP 590
>ref|NP_000543.1| von Willebrand factor precursor; Coagulation factor VIII VWF (von
Willebrand factor) [Homo sapiens]
gi|401413|sp|P04275|VWF_HUMAN Von Willebrand factor
precursor (vWF) gi|319923|pir||VWHU von Willebrand
factor precursor - human gi|340356|gb|AAB59458.1| von
Willebrand factor
Length = 2813
Score = 30.8 bits (68), Expect = 8.5
Identities = 23/67 (34%), Positives = 33/67 (48%)
Frame = +1
Query: 133 GKQGFKFKFTTPTIATTRVLGFLSPG*WYLYGQCSHIYPRYNRNRNLNPKVERIILAECA 312
G QG F T +A RV F + W L+G C + +++ LNP++ R CA
Sbjct: 529 GNQGDDF-LTPSGLAEPRVEDFGNA--WKLHGDCQDLQKQHSDPCALNPRMTRFSEEACA 585
Query: 313 VYNLTTP 333
V LT+P
Sbjct: 586 V--LTSP 590
>emb|CAA27972.1| VWF pre-pro-polypeptide (-22 to 2791) [Homo sapiens]
Length = 2813
Score = 30.8 bits (68), Expect = 8.5
Identities = 23/67 (34%), Positives = 33/67 (48%)
Frame = +1
Query: 133 GKQGFKFKFTTPTIATTRVLGFLSPG*WYLYGQCSHIYPRYNRNRNLNPKVERIILAECA 312
G QG F T +A RV F + W L+G C + +++ LNP++ R CA
Sbjct: 529 GNQGDDF-LTPSGLAEPRVEDFGNA--WKLHGDCQDLQKQHSDPCALNPRMTRFSEEACA 585
Query: 313 VYNLTTP 333
V LT+P
Sbjct: 586 V--LTSP 590
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,159,247
Number of Sequences: 1393205
Number of extensions: 11415949
Number of successful extensions: 28433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28429
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
