Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004981A_C01 KMC004981A_c01
(966 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178360.2| unknown protein; protein id: At2g02560.1, suppo... 360 2e-98
pir||T00607 hypothetical protein At2g02560 [imported] - Arabidop... 360 2e-98
gb|AAO51125.1| similar to Homo sapiens (Human). Hypothetical pro... 200 3e-50
ref|NP_446456.1| TBP-interacting protein 120A [Rattus norvegicus... 197 3e-49
emb|CAD38737.1| hypothetical protein [Homo sapiens] 196 3e-49
>ref|NP_178360.2| unknown protein; protein id: At2g02560.1, supported by cDNA:
gi_20466781 [Arabidopsis thaliana]
gi|20466782|gb|AAM20708.1| unknown protein [Arabidopsis
thaliana]
Length = 1219
Score = 360 bits (923), Expect = 2e-98
Identities = 178/223 (79%), Positives = 203/223 (90%)
Frame = -3
Query: 964 PEKIDEIIYPEISSFLMLIKDNNRHVRRAAVLALSTFAHNKPNLIKGLLSDLLPLLYDQT 785
PEK+DEII+P+ISSFLMLIKD +RHVRRAAV ALSTFAH KPNLIKGLL +LLPLLYDQT
Sbjct: 997 PEKLDEIIFPQISSFLMLIKDGDRHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQT 1056
Query: 784 IVKQELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQLNPSSFIVPYLKSGLDD 605
++K+ELIRTVDLGPFKH VDDGLELRKAAFECV TL+DSCLDQ+NPSSFIVP+LKSGL+D
Sbjct: 1057 VIKKELIRTVDLGPFKHVVDDGLELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLED 1116
Query: 604 HYDVKMPCHLILSKLADNCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRS 425
HYD+KM CHLILS LAD CPSAVLAVLDSLV+PL KTI+FKPKQDAVKQE DRNEDMIRS
Sbjct: 1117 HYDLKMLCHLILSLLADKCPSAVLAVLDSLVEPLHKTISFKPKQDAVKQEHDRNEDMIRS 1176
Query: 424 ALRAVASLNRISGGDCSVKFKSLMNEISKSQTLWDKYYSIRNE 296
ALRA++SL+RI+G D S KFK LM ++ +S LW+K+ +IRNE
Sbjct: 1177 ALRAISSLDRINGVDYSHKFKGLMGDMKRSVPLWEKFQTIRNE 1219
>pir||T00607 hypothetical protein At2g02560 [imported] - Arabidopsis thaliana
gi|3184283|gb|AAC18930.1| unknown protein [Arabidopsis
thaliana]
Length = 1217
Score = 360 bits (923), Expect = 2e-98
Identities = 178/223 (79%), Positives = 203/223 (90%)
Frame = -3
Query: 964 PEKIDEIIYPEISSFLMLIKDNNRHVRRAAVLALSTFAHNKPNLIKGLLSDLLPLLYDQT 785
PEK+DEII+P+ISSFLMLIKD +RHVRRAAV ALSTFAH KPNLIKGLL +LLPLLYDQT
Sbjct: 995 PEKLDEIIFPQISSFLMLIKDGDRHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQT 1054
Query: 784 IVKQELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQLNPSSFIVPYLKSGLDD 605
++K+ELIRTVDLGPFKH VDDGLELRKAAFECV TL+DSCLDQ+NPSSFIVP+LKSGL+D
Sbjct: 1055 VIKKELIRTVDLGPFKHVVDDGLELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLED 1114
Query: 604 HYDVKMPCHLILSKLADNCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRS 425
HYD+KM CHLILS LAD CPSAVLAVLDSLV+PL KTI+FKPKQDAVKQE DRNEDMIRS
Sbjct: 1115 HYDLKMLCHLILSLLADKCPSAVLAVLDSLVEPLHKTISFKPKQDAVKQEHDRNEDMIRS 1174
Query: 424 ALRAVASLNRISGGDCSVKFKSLMNEISKSQTLWDKYYSIRNE 296
ALRA++SL+RI+G D S KFK LM ++ +S LW+K+ +IRNE
Sbjct: 1175 ALRAISSLDRINGVDYSHKFKGLMGDMKRSVPLWEKFQTIRNE 1217
>gb|AAO51125.1| similar to Homo sapiens (Human). Hypothetical protein [Dictyostelium
discoideum]
Length = 1238
Score = 200 bits (508), Expect = 3e-50
Identities = 103/222 (46%), Positives = 153/222 (68%)
Frame = -3
Query: 961 EKIDEIIYPEISSFLMLIKDNNRHVRRAAVLALSTFAHNKPNLIKGLLSDLLPLLYDQTI 782
E +D+ + P IS FL L+ D + VRR+A+L+L+ AHNKPNLI+ LS LP+LY+
Sbjct: 1004 EVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVYLPILYNNAK 1063
Query: 781 VKQELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQLNPSSFIVPYLKSGLDDH 602
+K ELIR VDLGPFKH VDDG+E+RK AFEC+ TLLD+ +D+++ + FIV D
Sbjct: 1064 IKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVSLCDGLKDTQ 1123
Query: 601 YDVKMPCHLILSKLADNCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSA 422
YD+K+ CHL++ +LA++ +A+L + L++PL+ + K + AVKQ+++RNE+ IRSA
Sbjct: 1124 YDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQIERNEECIRSA 1183
Query: 421 LRAVASLNRISGGDCSVKFKSLMNEISKSQTLWDKYYSIRNE 296
LRAVAS++RI D VKF+ + ++ L ++ SI +E
Sbjct: 1184 LRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSILSE 1225
>ref|NP_446456.1| TBP-interacting protein 120A [Rattus norvegicus]
gi|11281653|pir||T42735 TBP-interacting protein TIP120 -
rat gi|1799570|dbj|BAA13432.1| TIP120 [Rattus norvegicus]
gi|7688703|gb|AAF67492.1|AF157326_1 TIP120 protein [Homo
sapiens]
Length = 1230
Score = 197 bits (500), Expect = 3e-49
Identities = 104/223 (46%), Positives = 155/223 (68%)
Frame = -3
Query: 964 PEKIDEIIYPEISSFLMLIKDNNRHVRRAAVLALSTFAHNKPNLIKGLLSDLLPLLYDQT 785
P+ ID ++ I FL ++D + +VRR A++ ++ AHNKP+LI+ LL +LP LY++T
Sbjct: 997 PQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNET 1056
Query: 784 IVKQELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQLNPSSFIVPYLKSGLDD 605
V++ELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+L+ F+ +++ GL D
Sbjct: 1057 KVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKD 1115
Query: 604 HYDVKMPCHLILSKLADNCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRS 425
HYD+KM L+L +L+ CPSAVL LD LV+PL+ T K K ++VKQE ++ +++ RS
Sbjct: 1116 HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRS 1175
Query: 424 ALRAVASLNRISGGDCSVKFKSLMNEISKSQTLWDKYYSIRNE 296
A+RAVA+L I + S ++IS + L + SI+ +
Sbjct: 1176 AMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218
>emb|CAD38737.1| hypothetical protein [Homo sapiens]
Length = 770
Score = 196 bits (499), Expect = 3e-49
Identities = 104/223 (46%), Positives = 155/223 (68%)
Frame = -3
Query: 964 PEKIDEIIYPEISSFLMLIKDNNRHVRRAAVLALSTFAHNKPNLIKGLLSDLLPLLYDQT 785
P+ ID ++ I FL ++D + +VRR A++ ++ AHNKP+LI+ LL +LP LY++T
Sbjct: 537 PQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNET 596
Query: 784 IVKQELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQLNPSSFIVPYLKSGLDD 605
V++ELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+L+ F+ +++ GL D
Sbjct: 597 KVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKD 655
Query: 604 HYDVKMPCHLILSKLADNCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRS 425
HYD+KM L+L +L+ CPSAVL LD LV+PL+ T K K ++VKQE ++ +++ RS
Sbjct: 656 HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRS 715
Query: 424 ALRAVASLNRISGGDCSVKFKSLMNEISKSQTLWDKYYSIRNE 296
A+RAVA+L I + S ++IS + L + SI+ +
Sbjct: 716 AMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 758
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 759,651,989
Number of Sequences: 1393205
Number of extensions: 15513547
Number of successful extensions: 35344
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 34095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35306
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54910356336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
