Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004977A_C01 KMC004977A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189910.1| putative protein; protein id: At3g43240.1 [Arab... 89 3e-17
gb|AAM27513.1| LD24134p [Drosophila melanogaster] 32 7.2
ref|NP_650036.2| CG6621-PA [Drosophila melanogaster] gi|28381241... 32 7.2
>ref|NP_189910.1| putative protein; protein id: At3g43240.1 [Arabidopsis thaliana]
gi|11288869|pir||T49238 hypothetical protein F7K15.90 -
Arabidopsis thaliana gi|7649364|emb|CAB89045.1| putative
protein [Arabidopsis thaliana]
Length = 717
Score = 89.4 bits (220), Expect = 3e-17
Identities = 37/48 (77%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Frame = -3
Query: 564 GEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKK-QSVTNG 424
GEWAHFGCDRR GLGAFKDYAKTDGLEY+CP+CS++N++KK Q +NG
Sbjct: 665 GEWAHFGCDRRPGLGAFKDYAKTDGLEYVCPNCSVSNYRKKSQKTSNG 712
>gb|AAM27513.1| LD24134p [Drosophila melanogaster]
Length = 872
Score = 31.6 bits (70), Expect = 7.2
Identities = 20/67 (29%), Positives = 33/67 (48%)
Frame = +3
Query: 6 F*KKKTLKLSIKSYKQVSCTYKTIHF*DSGNKVNYKSLSQLRVDGILKG*EFHNLNYEVL 185
F K LK + +K++ Y IH D + +Y+ D + K EF N NY++L
Sbjct: 210 FNKVPDLKFGLCDFKELPKYYSKIHNLDHPSASHYE-------DELNKALEFENPNYDLL 262
Query: 186 FPLDQIQ 206
F ++ +Q
Sbjct: 263 FQMNGLQ 269
>ref|NP_650036.2| CG6621-PA [Drosophila melanogaster] gi|28381241|gb|AAF54579.2|
CG6621-PA [Drosophila melanogaster]
Length = 872
Score = 31.6 bits (70), Expect = 7.2
Identities = 20/67 (29%), Positives = 33/67 (48%)
Frame = +3
Query: 6 F*KKKTLKLSIKSYKQVSCTYKTIHF*DSGNKVNYKSLSQLRVDGILKG*EFHNLNYEVL 185
F K LK + +K++ Y IH D + +Y+ D + K EF N NY++L
Sbjct: 210 FNKVPDLKFGLCDFKELPKYYSKIHNLDHPSASHYE-------DELNKALEFENPNYDLL 262
Query: 186 FPLDQIQ 206
F ++ +Q
Sbjct: 263 FQMNGLQ 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,765,358
Number of Sequences: 1393205
Number of extensions: 8885713
Number of successful extensions: 14660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14660
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
