Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004976A_C01 KMC004976A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC23542.1| receptor protein kinase [Ipomoea trifida] 130 9e-30
ref|NP_194460.1| putative receptor protein kinase; protein id: A... 124 4e-28
dbj|BAB40987.1| SRKb [Arabidopsis lyrata] 123 8e-28
gb|AAF23832.1|AC007234_4 F1E22.15 [Arabidopsis thaliana] 120 7e-27
ref|NP_176755.1| receptor kinase, putative; protein id: At1g6579... 120 7e-27
>gb|AAC23542.1| receptor protein kinase [Ipomoea trifida]
Length = 853
Score = 130 bits (326), Expect = 9e-30
Identities = 69/131 (52%), Positives = 92/131 (69%), Gaps = 4/131 (3%)
Frame = -1
Query: 471 ILLEIVTGKKNRGFSHSSNSIYLIGHAWRFWKENQPLDLIDPRM-EKYSSDLSEALRCIH 295
++LEIVTGKKNRGF + +N L+GHAWR W+E + +L+D + E YS L E +RCI
Sbjct: 725 LVLEIVTGKKNRGFYNQNNQQNLLGHAWRLWRERRGSELLDSAIGESYS--LCEVMRCIQ 782
Query: 294 ISLLCVQQHPEDRPNMSTVVVMLSSESA-LPQPKEPAFLIDKSFLEADSSTKH--PSSST 124
+ LLCVQ+ EDRPNM+TVV+ML SESA LPQPK P F + + DSST + S +
Sbjct: 783 VGLLCVQEQAEDRPNMATVVLMLGSESATLPQPKHPGFCLGSRPADMDSSTSNCDESCTV 842
Query: 123 NEISVTMLEPR 91
N+++VTML+ R
Sbjct: 843 NQVTVTMLDGR 853
>ref|NP_194460.1| putative receptor protein kinase; protein id: At4g27300.1
[Arabidopsis thaliana] gi|7428020|pir||T05754 S-receptor
kinase (EC 2.7.1.-) M4I22.110 precursor - Arabidopsis
thaliana gi|3269291|emb|CAA19724.1| putative receptor
protein kinase [Arabidopsis thaliana]
gi|7269583|emb|CAB79585.1| putative receptor protein
kinase [Arabidopsis thaliana]
Length = 815
Score = 124 bits (312), Expect = 4e-28
Identities = 56/127 (44%), Positives = 88/127 (69%)
Frame = -1
Query: 471 ILLEIVTGKKNRGFSHSSNSIYLIGHAWRFWKENQPLDLIDPRMEKYSSDLSEALRCIHI 292
++LEI+TGK NRGF H+ + + L+GH W+ W E++ +++ + + +S + E LRCIH+
Sbjct: 691 LVLEIITGKTNRGFRHADHDLNLLGHVWKMWVEDREIEVPEEEWLEETSVIPEVLRCIHV 750
Query: 291 SLLCVQQHPEDRPNMSTVVVMLSSESALPQPKEPAFLIDKSFLEADSSTKHPSSSTNEIS 112
+LLCVQQ PEDRP M++VV+M S+S+LP P +P F +++ + SS S NE+S
Sbjct: 751 ALLCVQQKPEDRPTMASVVLMFGSDSSLPHPTQPGFFTNRNVPDISSSLS--LRSQNEVS 808
Query: 111 VTMLEPR 91
+TML+ R
Sbjct: 809 ITMLQGR 815
>dbj|BAB40987.1| SRKb [Arabidopsis lyrata]
Length = 853
Score = 123 bits (309), Expect = 8e-28
Identities = 66/136 (48%), Positives = 93/136 (67%), Gaps = 9/136 (6%)
Frame = -1
Query: 471 ILLEIVTGKKNRGFSHSSNSIYLIGHAWRFWKENQPLDLIDPRMEKYSSDLS-----EAL 307
++LEIV+GKKNRGF +S+ L+G+AWR WKE + L+++DP + SS S E L
Sbjct: 718 LVLEIVSGKKNRGFYNSNQDNNLLGYAWRNWKEGKGLEILDPFIVDSSSSPSAFRPHEVL 777
Query: 306 RCIHISLLCVQQHPEDRPNMSTVVVMLSSES-ALPQPKEPAFLIDKSFLEADSST---KH 139
RCI I LLCVQ+ EDRP MS+VVVML SE+ +PQPK P + + +S E DSST +
Sbjct: 778 RCIQIGLLCVQERAEDRPVMSSVVVMLRSETETIPQPKPPGYCVGRSPFETDSSTHEQRD 837
Query: 138 PSSSTNEISVTMLEPR 91
S + N+I+++ ++PR
Sbjct: 838 ESCTVNQITISAIDPR 853
>gb|AAF23832.1|AC007234_4 F1E22.15 [Arabidopsis thaliana]
Length = 1662
Score = 120 bits (301), Expect = 7e-27
Identities = 63/134 (47%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = -1
Query: 471 ILLEIVTGKKNRGFSHSSNSIYLIGHAWRFWKENQPLDLIDP-RMEKYSSDL--SEALRC 301
+LLEI++GK+N+GF +S+ + L+G WR WKE L+++DP ++ SS E LRC
Sbjct: 710 LLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGNELEIVDPINIDSLSSKFPTHEILRC 769
Query: 300 IHISLLCVQQHPEDRPNMSTVVVMLSSE-SALPQPKEPAFLIDKSFLEADSST---KHPS 133
I I LLCVQ+ EDRP MS+V+VML SE +A+PQPK P F I +S LEADSS+ +
Sbjct: 770 IQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCIGRSPLEADSSSSTQRDDE 829
Query: 132 SSTNEISVTMLEPR 91
+ N+I++++++ R
Sbjct: 830 CTVNQITLSVIDAR 843
Score = 120 bits (300), Expect = 9e-27
Identities = 60/134 (44%), Positives = 94/134 (69%), Gaps = 7/134 (5%)
Frame = -1
Query: 471 ILLEIVTGKKNRGFSHSSNSIYLIGHAWRFWKENQPLDLIDP-RMEKYSSDL--SEALRC 301
+LLEI++GK+N+GF +S+ + L+G WR WKE + L+++DP ++ SS+ E LRC
Sbjct: 1529 LLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGKELEIVDPINIDALSSEFPTHEILRC 1588
Query: 300 IHISLLCVQQHPEDRPNMSTVVVMLSSE-SALPQPKEPAFLIDKSFLEADSST---KHPS 133
I I LLCVQ+ EDRP MS+V+VML SE +A+PQPK P F + +S LE DSS+ +
Sbjct: 1589 IQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCVGRSSLEVDSSSSTQRDDE 1648
Query: 132 SSTNEISVTMLEPR 91
+ N++++++++ R
Sbjct: 1649 CTVNQVTLSVIDAR 1662
>ref|NP_176755.1| receptor kinase, putative; protein id: At1g65790.1 [Arabidopsis
thaliana] gi|2129703|pir||S70769 S-receptor kinase (EC
2.7.1.-) Ark1 precursor - Arabidopsis thaliana
gi|166692|gb|AAA32786.1| receptor kinase
gi|445123|prf||1908429A receptor kinase
Length = 843
Score = 120 bits (301), Expect = 7e-27
Identities = 63/134 (47%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = -1
Query: 471 ILLEIVTGKKNRGFSHSSNSIYLIGHAWRFWKENQPLDLIDP-RMEKYSSDL--SEALRC 301
+LLEI++GK+N+GF +S+ + L+G WR WKE L+++DP ++ SS E LRC
Sbjct: 710 LLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGNELEIVDPINIDSLSSKFPTHEILRC 769
Query: 300 IHISLLCVQQHPEDRPNMSTVVVMLSSE-SALPQPKEPAFLIDKSFLEADSST---KHPS 133
I I LLCVQ+ EDRP MS+V+VML SE +A+PQPK P F I +S LEADSS+ +
Sbjct: 770 IQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCIGRSPLEADSSSSTQRDDE 829
Query: 132 SSTNEISVTMLEPR 91
+ N+I++++++ R
Sbjct: 830 CTVNQITLSVIDAR 843
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,194,776
Number of Sequences: 1393205
Number of extensions: 8582754
Number of successful extensions: 21201
Number of sequences better than 10.0: 892
Number of HSP's better than 10.0 without gapping: 20263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20744
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
