Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004973A_C01 KMC004973A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177593.1| unknown protein; protein id: At1g74530.1 [Arabi... 148 5e-35
dbj|BAA95982.1| KIAA1458 protein [Homo sapiens] 35 0.67
ref|XP_044434.1| similar to KIAA1458 protein [Homo sapiens] gi|2... 35 0.67
gb|ZP_00043599.1| hypothetical protein [Magnetococcus sp. MC-1] 34 1.2
ref|XP_223362.1| similar to hypothetical protein FLJ30046 [Homo ... 34 1.5
>ref|NP_177593.1| unknown protein; protein id: At1g74530.1 [Arabidopsis thaliana]
gi|25373337|pir||D96774 unknown protein F1M20.21
[imported] - Arabidopsis thaliana
gi|12324803|gb|AAG52365.1|AC011765_17 unknown protein;
68364-66043 [Arabidopsis thaliana]
Length = 318
Score = 148 bits (373), Expect = 5e-35
Identities = 71/101 (70%), Positives = 83/101 (81%)
Frame = -3
Query: 578 PITIRAKLKNVLPRAPEKQLYDASILHTTFARLLGPSSTKERLETSDDVQFFHELVNRLN 399
PITIR KL++VLPRAPEKQLYDA+ILHT+ ARLLGP + + D +Q HELV RLN
Sbjct: 217 PITIRLKLRSVLPRAPEKQLYDAAILHTSLARLLGPPISPTEAGSDDHLQLLHELVTRLN 276
Query: 398 NQIHGFKAVVSELWYVEEYDVLALALNGRMNVRKFKLGCSR 276
NQI GFKA+VSELWYVEE+D+LALAL GRMNVR F LGC++
Sbjct: 277 NQIRGFKAIVSELWYVEEFDLLALALGGRMNVRSFPLGCAK 317
>dbj|BAA95982.1| KIAA1458 protein [Homo sapiens]
Length = 612
Score = 35.0 bits (79), Expect = 0.67
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +1
Query: 223 KKGVMHPVNLTCLS-KLQSLEHPSLNLRTFILPFSARASTSYSSTYQSSDTTALNPCI*L 399
KK ++H ++ T + K Q+L + N ++ P+S AS+ YSS + S +T + P I
Sbjct: 198 KKSLIHKLDQTMSALKRQNLYNNPFNSMSYTSPYSPNASSPYSSGFNSPSSTPVRPPIVK 257
Query: 400 LSRLTSSWKN*TSSD----VSSRSLVD 468
L + N SSD +S +S +D
Sbjct: 258 QLILPGNSGNLKSSDRNPPLSPQSSID 284
>ref|XP_044434.1| similar to KIAA1458 protein [Homo sapiens]
gi|26454712|gb|AAH40993.1| Similar to RIKEN cDNA
5033405K12 gene [Homo sapiens]
Length = 581
Score = 35.0 bits (79), Expect = 0.67
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +1
Query: 223 KKGVMHPVNLTCLS-KLQSLEHPSLNLRTFILPFSARASTSYSSTYQSSDTTALNPCI*L 399
KK ++H ++ T + K Q+L + N ++ P+S AS+ YSS + S +T + P I
Sbjct: 167 KKSLIHKLDQTMSALKRQNLYNNPFNSMSYTSPYSPNASSPYSSGFNSPSSTPVRPPIVK 226
Query: 400 LSRLTSSWKN*TSSD----VSSRSLVD 468
L + N SSD +S +S +D
Sbjct: 227 QLILPGNSGNLKSSDRNPPLSPQSSID 253
>gb|ZP_00043599.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 1416
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 4/47 (8%)
Frame = -3
Query: 485 RLLGPSSTKERLETSDDVQFFH----ELVNRLNNQIHGFKAVVSELW 357
RLL P+S ERL D FFH +L+N L + IH + + + W
Sbjct: 31 RLLSPTSGYERLNDQDSATFFHDVAPQLMNDLTDTIHALRRHLLKEW 77
>ref|XP_223362.1| similar to hypothetical protein FLJ30046 [Homo sapiens] [Rattus
norvegicus]
Length = 1217
Score = 33.9 bits (76), Expect = 1.5
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 223 KKGVMHPVNLTCLS-KLQSLEHPSLNLRTFILPFSARASTSYSSTYQSSDTTALNPCI 393
KK ++H ++ T + K Q+L + N ++ P+S AS+ YSS + S +T + P I
Sbjct: 626 KKSLIHKLDQTMSALKRQNLYNNPFNSMSYSSPYSPNASSPYSSGFNSPSSTPVRPPI 683
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,839,409
Number of Sequences: 1393205
Number of extensions: 9328275
Number of successful extensions: 18185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18179
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
