Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004971A_C01 KMC004971A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B85045 probable calcium channel [imported] - Arabidopsis th... 46 4e-04
ref|NP_567258.1| putative calcium channel; protein id: At4g03560... 46 4e-04
dbj|BAB55460.1| two-pore calcium channel [Arabidopsis thaliana] 46 4e-04
ref|NP_702543.1| hypothetical protein [Plasmodium falciparum 3D7... 32 9.1
>pir||B85045 probable calcium channel [imported] - Arabidopsis thaliana
gi|4206210|gb|AAD11598.1|AAD11598 putative calcium
channel [Arabidopsis thaliana] gi|4263043|gb|AAD15312.1|
putative calcium channel [Arabidopsis thaliana]
gi|7270679|emb|CAB77841.1| putative calcium channel
[Arabidopsis thaliana]
Length = 724
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -2
Query: 610 DQYRRRRSVGTKTRSQRVDALLHHMLSSELCQDQPSNA*T 491
++ RRRS G+K+RSQRVD LLHHML EL + + S + T
Sbjct: 685 EKRNRRRSAGSKSRSQRVDTLLHHMLGDELSKPECSTSDT 724
>ref|NP_567258.1| putative calcium channel; protein id: At4g03560.1, supported by
cDNA: gi_13786068, supported by cDNA: gi_14349162
[Arabidopsis thaliana]
gi|13786069|gb|AAK39554.1|AF360372_1 putative calcium
channel [Arabidopsis thaliana]
Length = 733
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -2
Query: 610 DQYRRRRSVGTKTRSQRVDALLHHMLSSELCQDQPSNA*T 491
++ RRRS G+K+RSQRVD LLHHML EL + + S + T
Sbjct: 694 EKRNRRRSAGSKSRSQRVDTLLHHMLGDELSKPECSTSDT 733
>dbj|BAB55460.1| two-pore calcium channel [Arabidopsis thaliana]
Length = 733
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -2
Query: 610 DQYRRRRSVGTKTRSQRVDALLHHMLSSELCQDQPSNA*T 491
++ RRRS G+K+RSQRVD LLHHML EL + + S + T
Sbjct: 694 EKRNRRRSAGSKSRSQRVDTLLHHMLGDELSKPECSTSDT 733
>ref|NP_702543.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497729|gb|AAN37267.1|AE014827_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1837
Score = 31.6 bits (70), Expect = 9.1
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = -2
Query: 112 YYQYNFVGVQTISSFILFH*CNCLVWGNI 26
Y + NF+ V S +LF+ CNC+V G I
Sbjct: 1676 YDEINFINVLKNSKLVLFYKCNCIVKGKI 1704
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,858,980
Number of Sequences: 1393205
Number of extensions: 11906870
Number of successful extensions: 28740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28733
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
