Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004967A_C01 KMC004967A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD59683.1| hypothetical protein [Cicer arietinum] 77 2e-13
ref|NP_485197.1| unknown protein [Nostoc sp. PCC 7120] gi|255336... 35 0.80
ref|NP_444449.1| vomeronasal 1 receptor, A4 [Mus musculus] gi|11... 35 1.0
dbj|BAB79213.1| vomeronasal receptor 1 A7 [Mus musculus] 35 1.0
ref|XP_193111.1| vomeronasal 1 receptor, A3 [Mus musculus] 35 1.0
>emb|CAD59683.1| hypothetical protein [Cicer arietinum]
Length = 296
Score = 76.6 bits (187), Expect = 2e-13
Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = -2
Query: 623 LRYQFELNGSHFSHPDPSVYTTDVVLNRQQIVDTDMPEPTDD---ESEEATNVENHVTGD 453
+RYQFE NGS+F H +P++ +TD V N QQ DTDM E DD E EAT V+NHV GD
Sbjct: 150 MRYQFEQNGSYFGHLEPTL-STDEVQNIQQTADTDMLEQKDDMPNERSEATTVDNHVPGD 208
Query: 452 VPPEDSSMEDVTTGGGSA 399
+PPE SMED T G +
Sbjct: 209 MPPE-RSMEDATKVDGDS 225
Score = 61.6 bits (148), Expect = 8e-09
Identities = 38/73 (52%), Positives = 46/73 (62%), Gaps = 2/73 (2%)
Frame = -2
Query: 587 SHPDPSVYTTDVVLNRQQIVDTDMPEPTDD--ESEEATNVENHVTGDVPPEDSSMEDVTT 414
SH +P V T+ V N QQI TDMPE D E+ EA V+NHV ++PPE SMEDV+
Sbjct: 225 SHLEPLV-NTNKVQNSQQIAVTDMPEQDDKPHETVEAPTVDNHVASNIPPE-KSMEDVSV 282
Query: 413 GGGSASVANGSPT 375
GS VANG+ T
Sbjct: 283 VDGSDGVANGNRT 295
>ref|NP_485197.1| unknown protein [Nostoc sp. PCC 7120] gi|25533642|pir||AG1950
hypothetical protein all1154 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130500|dbj|BAB73111.1|
ORF_ID:all1154~unknown protein [Nostoc sp. PCC 7120]
Length = 369
Score = 35.0 bits (79), Expect = 0.80
Identities = 23/65 (35%), Positives = 32/65 (48%), Gaps = 4/65 (6%)
Frame = -2
Query: 560 TDVVLNRQQIVDTDMPEPTDDESEEATNV-ENHVTGDVPPEDSSME---DVTTGGGSASV 393
T ++ N+Q +V D+P P DE + A N+ E+ P E SS E D G S S
Sbjct: 51 TAILRNQQSVVTEDLPVPVSDEPQVAPNIPESKELPSSPMEPSSFEMGLDKAAGAESISQ 110
Query: 392 ANGSP 378
+ SP
Sbjct: 111 SAQSP 115
>ref|NP_444449.1| vomeronasal 1 receptor, A4 [Mus musculus]
gi|11967387|gb|AAG42077.1|AF291483_1 vomeronasal
receptor V1RA4 [Mus musculus]
Length = 310
Score = 34.7 bits (78), Expect = 1.0
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 330 LLSLLLVCIVEGLLYCWAPICNTSTATTSSNILHATIFWWHVSSHMVLNICSFLTFIICR 509
+LS+L I+ YC A S+ S I+ ++ + +SSH+ ++I + L +
Sbjct: 105 MLSVLQAIILSPRSYCLAKFKRKSSHNISCAIIFLSVLYMSISSHLFISITATLNLTMNN 164
Query: 510 FRHISVH-NLLPV*HHIGCVYRWVWVTK 590
F ++S +LLP+ + + +Y + V +
Sbjct: 165 FLYVSQSCSLLPLSYLMQSMYSTLLVLR 192
>dbj|BAB79213.1| vomeronasal receptor 1 A7 [Mus musculus]
Length = 310
Score = 34.7 bits (78), Expect = 1.0
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 330 LLSLLLVCIVEGLLYCWAPICNTSTATTSSNILHATIFWWHVSSHMVLNICSFLTFIICR 509
+LS+L I+ YC A S+ S I+ ++ + +SSH+ ++I + L +
Sbjct: 105 MLSVLQAIILSPRSYCLAKFKRKSSHNISCAIIFLSVLYMSISSHLFISITATLNLTMNN 164
Query: 510 FRHISVH-NLLPV*HHIGCVYRWVWVTK 590
F ++S +LLP+ + + +Y + V +
Sbjct: 165 FLYVSQSCSLLPLSYLMQSMYSTLLVLR 192
>ref|XP_193111.1| vomeronasal 1 receptor, A3 [Mus musculus]
Length = 302
Score = 34.7 bits (78), Expect = 1.0
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 330 LLSLLLVCIVEGLLYCWAPICNTSTATTSSNILHATIFWWHVSSHMVLNICSFLTFIICR 509
+LS+L I+ YC A S+ S I+ ++ + +SSH+ ++I + L +
Sbjct: 105 MLSVLQAIILSPRSYCLAKFKRKSSHNISCAIIFLSVLYMSISSHLFISITATLNLTMNN 164
Query: 510 FRHISVH-NLLPV*HHIGCVYRWVWVTK 590
F ++S +LLP+ + + +Y + V +
Sbjct: 165 FLYVSQSCSLLPLSYLMQSMYSTLLVLR 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,052,859
Number of Sequences: 1393205
Number of extensions: 11917045
Number of successful extensions: 40281
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 35616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39848
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
