Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004966A_C01 KMC004966A_c01
(363 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_071830.1| putative tail protein [Methanothermobacter wolf... 30 5.9
ref|NP_731081.1| CG1021-PA [Drosophila melanogaster] gi|24644607... 30 7.7
gb|EAA21094.1| hypothetical protein [Plasmodium yoelii yoelii] 30 7.7
>ref|NP_071830.1| putative tail protein [Methanothermobacter wolfeii prophage psiM100]
gi|11692733|gb|AAG39969.1|AF301375_29 putative tail
protein [Methanothermobacter wolfeii prophage psiM100]
Length = 1157
Score = 30.4 bits (67), Expect = 5.9
Identities = 15/39 (38%), Positives = 18/39 (45%), Gaps = 2/39 (5%)
Frame = +1
Query: 244 RFAALSWPILALFLIPDDAGGF--FWESFNAGVRDGVRS 354
R + WP L +PD GG WE F A VR +S
Sbjct: 908 RIPSFKWPSLPSIKVPDIVGGIRSKWEQFKAWVRSAFKS 946
>ref|NP_731081.1| CG1021-PA [Drosophila melanogaster] gi|24644607|ref|NP_649654.2|
CG1021-PB [Drosophila melanogaster]
gi|23170663|gb|AAF54123.2| CG1021-PA [Drosophila
melanogaster] gi|23170664|gb|AAN13377.1| CG1021-PB
[Drosophila melanogaster]
Length = 646
Score = 30.0 bits (66), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = +1
Query: 85 EYTLGYNIHKRCHQSVTKNQVLDHTNETIICT 180
E+ +H+RCH+ + Q +D N I CT
Sbjct: 199 EFDSSKKVHRRCHERSSSVQAIDRLNTKIQCT 230
>gb|EAA21094.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1692
Score = 30.0 bits (66), Expect = 7.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Frame = -3
Query: 118 IFCGYCNLMCIHNHEAVFLFI------IKKPFFV 35
IF Y NL+C+HN E V+ F+ I +P F+
Sbjct: 1228 IFRKYINLLCMHNKEKVYKFVKYIQAEIYQPIFI 1261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,515,391
Number of Sequences: 1393205
Number of extensions: 5704939
Number of successful extensions: 13202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13201
length of database: 448,689,247
effective HSP length: 96
effective length of database: 314,941,567
effective search space used: 7558597608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
