Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004964A_C01 KMC004964A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201332.1| unknown protein; protein id: At5g65290.1 [Arabi... 45 4e-04
ref|NP_001713.1| RNA polymerase III 53 kDa subunit RPC4; tempera... 36 0.19
ref|XP_224335.1| similar to RIKEN cDNA 2810426M17 [Mus musculus]... 34 0.72
ref|NP_080221.1| RIKEN cDNA 2810426M17 [Mus musculus] gi|1285035... 34 0.72
gb|AAH16102.1| RIKEN cDNA 2810426M17 gene [Mus musculus] 34 0.72
>ref|NP_201332.1| unknown protein; protein id: At5g65290.1 [Arabidopsis thaliana]
gi|9759609|dbj|BAB11551.1| gene_id:MNA5.1~unknown
protein [Arabidopsis thaliana]
Length = 733
Score = 45.1 bits (105), Expect = 4e-04
Identities = 27/58 (46%), Positives = 35/58 (59%), Gaps = 4/58 (6%)
Frame = -3
Query: 468 MKTGSKSFKANVGDEGFLPMR----LTQAYKSSGVSSSESESLDDIFQRLKRPSSDQS 307
MK G +SFK NV + FLP+R T + V+SS +SLD+IFQRLK S + S
Sbjct: 667 MKLGIQSFKENVATKKFLPLRQSPETTALTSTRVVTSSVPQSLDEIFQRLKNRSVEHS 724
>ref|NP_001713.1| RNA polymerase III 53 kDa subunit RPC4; temperature sensitive
complementation, cell cycle specific, tsBN51 [Homo
sapiens] gi|115081|sp|P05423|BN51_HUMAN BN51 protein
gi|280765|pir||A43700 BN51 protein - human
gi|179513|gb|AAA51838.1| BN51 protein
Length = 395
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/89 (32%), Positives = 41/89 (45%)
Frame = +2
Query: 125 QRERERERERGGEDSSARHPHYYTVVVVCTVHSQFQLLPQSMDII*KGQKDRPPINNPHP 304
+RER+R+R+R G R P V HS F+ P M + KG D+
Sbjct: 78 KRERDRDRQREGHGRGRRRPE------VIQSHSIFEQGPAEM-MKKKGNWDK-------T 123
Query: 305 CDWSDEGRFSL*NISSRDSDSDEETPELL 391
D SD G + NI ++DEET ++L
Sbjct: 124 VDVSDMGPSHIINIKKEKRETDEETKQIL 152
>ref|XP_224335.1| similar to RIKEN cDNA 2810426M17 [Mus musculus] [Rattus norvegicus]
Length = 546
Score = 34.3 bits (77), Expect = 0.72
Identities = 28/89 (31%), Positives = 40/89 (44%)
Frame = +2
Query: 125 QRERERERERGGEDSSARHPHYYTVVVVCTVHSQFQLLPQSMDII*KGQKDRPPINNPHP 304
+RER+R+R+R G P V HS F+ P M + KG D+
Sbjct: 268 KRERDRDRQREGHGRGRGRPE------VIQSHSIFEQGPAEM-MKKKGNWDK-------T 313
Query: 305 CDWSDEGRFSL*NISSRDSDSDEETPELL 391
D SD G + NI ++DEET ++L
Sbjct: 314 VDMSDMGPSHIINIKKEKRETDEETKQIL 342
>ref|NP_080221.1| RIKEN cDNA 2810426M17 [Mus musculus] gi|12850356|dbj|BAB28687.1|
unnamed protein product [Mus musculus]
Length = 398
Score = 34.3 bits (77), Expect = 0.72
Identities = 28/89 (31%), Positives = 40/89 (44%)
Frame = +2
Query: 125 QRERERERERGGEDSSARHPHYYTVVVVCTVHSQFQLLPQSMDII*KGQKDRPPINNPHP 304
+RER+R+R+R G P V HS F+ P M + KG D+
Sbjct: 81 KRERDRDRQREGHGRGRGRPE------VIQSHSIFEQGPAEM-MKKKGNWDK-------T 126
Query: 305 CDWSDEGRFSL*NISSRDSDSDEETPELL 391
D SD G + NI ++DEET ++L
Sbjct: 127 VDMSDMGPSHIINIKKEKRETDEETKQIL 155
>gb|AAH16102.1| RIKEN cDNA 2810426M17 gene [Mus musculus]
Length = 398
Score = 34.3 bits (77), Expect = 0.72
Identities = 28/89 (31%), Positives = 40/89 (44%)
Frame = +2
Query: 125 QRERERERERGGEDSSARHPHYYTVVVVCTVHSQFQLLPQSMDII*KGQKDRPPINNPHP 304
+RER+R+R+R G P V HS F+ P M + KG D+
Sbjct: 81 KRERDRDRQREGHGRGRGRPE------VIQSHSIFEQGPAEM-MKKKGNWDK-------T 126
Query: 305 CDWSDEGRFSL*NISSRDSDSDEETPELL 391
D SD G + NI ++DEET ++L
Sbjct: 127 VDMSDMGPSHIINIKKEKRETDEETKQIL 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,366,907
Number of Sequences: 1393205
Number of extensions: 9219983
Number of successful extensions: 36169
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30216
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
